RNA id: TU1745284


Basic Information

Item Value
RNA id TU1745284
length 2958
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G1524241
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20557879 ~ 20560856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACATTTACATTTCAGTGTAGCATGAAATTCAACCACATGGATGATCCCGTCAACTAGACATCCAGCCATCGTCATACTTTCTGATAGAGCACAGCTTAAAAGAGAAAGGTAACAGGTGTGTCCTTTATTCCTTTGAATGTTTTCATTCACGTTAGCAGATGAGCTGATACCAGTCCTGACCTGCATGCCCTTCACTAACACACTAGCTGAAGGGAAAATGGCCGCCGATTGCTTTATGTTTCATATCTACAGAAATGTGGACCATACAAGTGTTTCATGTGTCAATGTGTGCAGAATGTaaaacaagttgtagaaaaatggcaacctaaaaGTTCATTTGAAAAGCAACagtagctacacacacacagagagatgtctgcacacaaacacagacgcacacacgcgcgcgcacgctCACATAATACCCTTTGGGGCGTGGCCATGAGAAGATAAAAAGTGCTCTTACATCAAATGGAAGTGTTATGCATACTGTGGGTCCATATAGGACACCATACTATTTATAAATCGAACCAAATCACTATGCTTGAAAGAATCAGGCTTTGAATTAAAATCATTCATGAACTACGAGTACAGTGTGGAGTACAGACGAGTGCTAAACTCAACGCCAGGTGTCATATGCACGTATTATAATGGAGTTAGACATCTTTGGCAAAAGACCATCAATGTGTTCCCTTTATTATATTTTTGTTAGTCATCTTTCTTTACACGAGTGTTTCGACAGAAACAAGgagtggagagatagagagagatattgaaATACATCTGTCGGACACATTGCTTTGTGACAATGAATGTCTACGAAAATGAAGAAGATCTCATTGAATCCCTCTCAATGAATCTGTTGACATACATTCAGGATCTCTGTGGCCGTGGGCGTGTTCATAGAAACAGCGAGGGGAGAACAACAGCCATTCATATAGATGTACGAGATATAGTACGAGATATATCTTTACCAAGTGTCACCGATGATTAGTTTGTGCATAATGTAACGTTCACGTGATGAGTAACCTGAAGACCTGGGTTAGCTCCCCCGAGCTAAGTCTCAGACCTTACCTCAGCGGGCTAGCACAGTCTTGTGGTGTGCAGGAGACCCGGTTagttacatatacagtgcctacTTATTCCCAGAGGGATACACGAAAACTGCTGCCTGAGAACAAATAGTTCTGGGAGTAACAAAACACATATGGCGTTAGTATTGGGAACATGGATTTGTTTAGTCGCTGAGTTTTGCTGTACATGGTGTTTTTACAACCGTGAAAAGCAGTGGACACATTCTCACAATTACACAATAACACATTCCTTACCATAAAAAAACAATGAAATTGTACAAAAATGCAAGAACCTTAAGTAACACGGCGACCGTTATTCAAGACACTGGATGTATGATGGTAGCAGCAGCACTCGCTACAGAAAACTTCACAGTATACTCATGTGTGTCAGATAGTAACACTCAACAGAAAATCACAAGCGGTTACGCAACGGCATTTTGAGTCGCCGTCTTTCACTTACTCCTGGCAGTGATACATAACAATAATCTTCCCCTGCCTTGTTACTATGTAACCCCCTGGAACAGTCCCCTTAAATGGCTCCAATCCTGCTCTCAGGCCTCAGCTAGCTACACATCAGTTTGGCCTAGCAcccaacaccaccacaccctCTCCACCAACACATTAGCATACATCGGTCCTCCAAATCAAGCAAACGTCTTCGTACTCATCATTTGTCCTTTTGTTCGCTTATTTATTTTGCTCTCTCAGATCTGTCTCtcttctttttctccctcttttctttCTCATATTGGTCCTTTTTCAAGTTTGTGGCACTGTTGTGCGAAGGCAGCGAGGCGGTGGTGGGCGTAATGTCCGTTTTCTCTGTGGAGGTGGAGTTGTCCGCGAACTGTCCTATCACCAGCACCTCCTTGTCCTCCAGCTCATACATCACGCTGCCTTTAGGCTGCTCCTTGTAGAGCTCTGCTGCTTTCTTCAGGGCGAGTCGGGCCAGGTAGCGCCTGAAGGACCTCTGGATCACCAAGGCAGACATGTCTTCCTGCTTGCGCCGCAGGGTACTGGTGATGGGTTCGTAGGAGACTTTGGAGGGGTTGGAGGCCATGAAGCGCTCCTCCATCTGGCCCCGGAGGAGGTCCAAGCCTTCACCCTCTCCCAGGACACGCTTGGTGAAGGCAAACAGGATGTCAAGGCAGTGGATGCGCTCCCCGCTGACCATGGGCAGATCCATTTTGATCAGCTGGATGTGGTTGGGCTTGGCCATTCGCAGCGGTGGGTCCAAAGCGTCTGCAAAGTCCGACAGCTTGTCGTACTCCACAAACTGCGTGGCGTCCGGGTCGAAGCGCTCCCACACCTCGTAGAACATCTCAAAGTCGTCCTCGCTCAGCGGCTCGGCCGACTCCTCGGTGGCCACGCTGAAGTTCTCCAGGATGACGGCAATGTACATGTTGACCACGATGAGGAAACAGATGATGATGTAGCTGACGAAAAAGAACATGGCCACTGGCGGGTTGCCGCAGTTTCCCCGGTACAAGGTGCCCGGGTGCTCCATCTGGCTGTCGCAGTCGGGCTCCTTCTTGTTGAGGATGGGAGCCAGGAGGCCGTCCCAGCCCGCCGACGTGGTGATCTGGAACAGGCAGAGCATGCTGTTGCCGAACGTCTCGAAGTTGAACATGTCGTCGATTCCCGCCTCGTGCTTGACGTAGGCGAAGTTGGACATGCCGAAGATGGCGTAGATGAACATGACCAGGAAAAGCAGGAGGCCAATGTTAAACAGGGCAGGAAGTGACATCATCAAGGCGAACAAAAGCGTCCGGATGCCCTTGGCGCCCTTGATGAGACGGAGGATGCGGCCGATTCTGGCAAGTCGGATGACTCGGAATAACGTTGGGGAAACAAAGTACTTCTCAATCAATTCTGATAAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745222 lncRNA upstream 2884 20553846 ~ 20554995 (+) True G1524179
TU1745225 lncRNA upstream 31266 20499006 ~ 20526613 (+) True G1524182
TU1745196 lncRNA upstream 187280 20370071 ~ 20370599 (+) True G1524154
TU1745176 lncRNA upstream 211838 20345663 ~ 20346041 (+) True G1524137
TU1745175 lncRNA upstream 212370 20345074 ~ 20345509 (+) True G1524136
TU1745285 lncRNA downstream 637 20561493 ~ 20562121 (+) True G1524242
TU1745316 lncRNA downstream 39281 20600137 ~ 20600848 (+) True G1524272
TU1745321 lncRNA downstream 53359 20614215 ~ 20614829 (+) True G1524276
TU1746340 lncRNA downstream 78693 20639549 ~ 20639831 (+) True G1525178
TU1746344 lncRNA downstream 81647 20642503 ~ 20642820 (+) True G1525182
XM_021571226.2 mRNA upstream 5762 20527679 ~ 20552117 (+) False LOC110495794
XM_021571231.2 mRNA upstream 5762 20527680 ~ 20552117 (+) True LOC110495794
LOC110495791 mRNA upstream 229269 20313537 ~ 20328610 (+) False LOC110495791
XM_021571217.2 mRNA upstream 255779 20296017 ~ 20302100 (+) True LOC110495788
LOC110497092 mRNA upstream 311991 20244354 ~ 20245888 (+) True LOC110497092
XM_036952246.1 mRNA downstream 44030 20604886 ~ 20614129 (+) False LOC110495795
XM_036952244.1 mRNA downstream 44598 20605454 ~ 20614129 (+) False LOC110495795
XM_036952245.1 mRNA downstream 44599 20605455 ~ 20614129 (+) False LOC110495795
XM_036952247.1 mRNA downstream 44605 20605461 ~ 20614129 (+) True LOC110495795
XM_021571237.2 mRNA downstream 102555 20663411 ~ 20696331 (+) False LOC110495797
TU1745224 other upstream 74166 20473360 ~ 20483713 (+) True G1524181
TU1745162 other upstream 250975 20305705 ~ 20306904 (+) True G1524124
TU1745087 other upstream 322699 20206492 ~ 20235180 (+) False LOC110495784
TU1744971 other upstream 481567 20066254 ~ 20076312 (+) True LOC110495776
TU1744968 other upstream 524234 20015948 ~ 20033645 (+) True LOC110495777
TU1746485 other downstream 195835 20756691 ~ 20757412 (+) True G1525320
TU1748777 other downstream 2038557 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other downstream 2038641 22599497 ~ 22611452 (+) True LOC110497098
TU1749630 other downstream 2597977 23158833 ~ 23161291 (+) True G1528194
TU1751373 other downstream 3959879 24520735 ~ 24522946 (+) False LOC110495887

Expression Profile