RNA id: TU1745321


Basic Information

Item Value
RNA id TU1745321
length 615
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G1524276
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20614215 ~ 20614829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGATATACATTTTTGTACATGGAGTTTCCTGTTGGCTCATTTGTGTTGAAATGTGCCAAAACCGAGATTAAATCATATGTAATCTCTCATTTTATtttgataatttttttttttctgtcaatTTCCTTCTACGTATCACACCTTTTCTGAGTGAATAATTTTTTCCCAGACATCATTACTATATAATATAAAAATGATCAACCATAATCAACTAAGGTGTGTTGCTTTTTTTTGCCACTGGAGAGCAGGAGCACACTTCACAAATAAGTAATGTACAGAACCTCTGAGTGAGCTGTTTTGTGATCCACACTTGATAAATTAATAGCATTGACATATCCCGATATTTAAGAAGAGCATCAATTATACATTTTCTTTGTCTTTACTggttatacttttttttttttaaatgcattagTGTGTTTCAGTTCAAGCCTTGTTTTTATTGTCCATAATTGAGTTATGGTTGGTATTTGACAAGGATATTCTACCGGGAGCTATGTGTAGAACGTTGATGGAAGATAATGCACATGATGTGAAAAATAATGTCCTTGTTATGCATTCTATGTTGTTCAGAGTGCAACACTACAGAATAAACTGAGAATATACAGTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745316 lncRNA upstream 13367 20600137 ~ 20600848 (+) True G1524272
TU1745285 lncRNA upstream 52094 20561493 ~ 20562121 (+) True G1524242
TU1745284 lncRNA upstream 53359 20557879 ~ 20560856 (+) True G1524241
TU1745222 lncRNA upstream 59220 20553846 ~ 20554995 (+) True G1524179
TU1745225 lncRNA upstream 87602 20499006 ~ 20526613 (+) True G1524182
TU1746340 lncRNA downstream 24720 20639549 ~ 20639831 (+) True G1525178
TU1746344 lncRNA downstream 27674 20642503 ~ 20642820 (+) True G1525182
TU1746352 lncRNA downstream 32241 20647070 ~ 20647390 (+) True G1525190
TU1746373 lncRNA downstream 47869 20662698 ~ 20662981 (+) True G1525211
TU1746385 lncRNA downstream 55800 20670629 ~ 20670878 (+) True G1525223
XM_036952246.1 mRNA upstream 86 20604886 ~ 20614129 (+) False LOC110495795
XM_036952244.1 mRNA upstream 86 20605454 ~ 20614129 (+) False LOC110495795
XM_036952245.1 mRNA upstream 86 20605455 ~ 20614129 (+) False LOC110495795
XM_036952247.1 mRNA upstream 86 20605461 ~ 20614129 (+) True LOC110495795
XM_021571226.2 mRNA upstream 62098 20527679 ~ 20552117 (+) False LOC110495794
XM_021571237.2 mRNA downstream 48582 20663411 ~ 20696331 (+) False LOC110495797
XM_036952251.1 mRNA downstream 171240 20786069 ~ 20852072 (+) False LOC110495798
XM_036952248.1 mRNA downstream 171240 20786069 ~ 20855643 (+) False LOC110495798
XM_036952249.1 mRNA downstream 171240 20786069 ~ 20855643 (+) False LOC110495798
XM_036952250.1 mRNA downstream 171240 20786069 ~ 20855643 (+) True LOC110495798
TU1745224 other upstream 130502 20473360 ~ 20483713 (+) True G1524181
TU1745162 other upstream 307311 20305705 ~ 20306904 (+) True G1524124
TU1745087 other upstream 379035 20206492 ~ 20235180 (+) False LOC110495784
TU1744971 other upstream 537903 20066254 ~ 20076312 (+) True LOC110495776
TU1744968 other upstream 580570 20015948 ~ 20033645 (+) True LOC110495777
TU1746485 other downstream 141862 20756691 ~ 20757412 (+) True G1525320
TU1748777 other downstream 1984584 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other downstream 1984668 22599497 ~ 22611452 (+) True LOC110497098
TU1749630 other downstream 2544004 23158833 ~ 23161291 (+) True G1528194
TU1751373 other downstream 3905906 24520735 ~ 24522946 (+) False LOC110495887

Expression Profile