RNA id: TU1746352


Basic Information

Item Value
RNA id TU1746352
length 321
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1525190
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20647070 ~ 20647390 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAAGAATAGTCTTTGTTTAGCTTTTTTTCTTTCCATATACAATTTTCCAGATGGGTGTGATATTATTACTTTCCAATTTGCATTTAAATCTAGACGTGGAATAAGAGCATTTATTTGATTGACTGAGAAGTGTTCCCTGGTTCGTCACGATAGGAAGTCTAGCACATGATTACACCATGGCCCTTCATCCAGGAGGAGAACACTAGTCGACAGCCCAAATGTGCCCATTTTCAATTACCTCCTATTAGGAATTTCAATATCCACCCGTACTACAAGAGGCTTCTCAAACCCACCCtctaacctacacacacactcaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1746344 lncRNA upstream 4250 20642503 ~ 20642820 (+) True G1525182
TU1746340 lncRNA upstream 7239 20639549 ~ 20639831 (+) True G1525178
TU1745321 lncRNA upstream 32241 20614215 ~ 20614829 (+) True G1524276
TU1745316 lncRNA upstream 46222 20600137 ~ 20600848 (+) True G1524272
TU1745285 lncRNA upstream 84949 20561493 ~ 20562121 (+) True G1524242
TU1746373 lncRNA downstream 15308 20662698 ~ 20662981 (+) True G1525211
TU1746385 lncRNA downstream 23239 20670629 ~ 20670878 (+) True G1525223
TU1746416 lncRNA downstream 44717 20692107 ~ 20692326 (+) True G1525254
TU1746420 lncRNA downstream 46174 20693564 ~ 20693826 (+) True LOC110495797
TU1746440 lncRNA downstream 64770 20712160 ~ 20712367 (+) True G1525275
XM_036952246.1 mRNA upstream 32941 20604886 ~ 20614129 (+) False LOC110495795
XM_036952244.1 mRNA upstream 32941 20605454 ~ 20614129 (+) False LOC110495795
XM_036952245.1 mRNA upstream 32941 20605455 ~ 20614129 (+) False LOC110495795
XM_036952247.1 mRNA upstream 32941 20605461 ~ 20614129 (+) True LOC110495795
XM_021571231.2 mRNA upstream 94953 20527680 ~ 20552117 (+) True LOC110495794
XM_021571237.2 mRNA downstream 16021 20663411 ~ 20696331 (+) False LOC110495797
XM_036952251.1 mRNA downstream 138679 20786069 ~ 20852072 (+) False LOC110495798
XM_036952248.1 mRNA downstream 138679 20786069 ~ 20855643 (+) False LOC110495798
XM_036952249.1 mRNA downstream 138679 20786069 ~ 20855643 (+) False LOC110495798
XM_036952250.1 mRNA downstream 138679 20786069 ~ 20855643 (+) True LOC110495798
TU1745224 other upstream 163357 20473360 ~ 20483713 (+) True G1524181
TU1745162 other upstream 340166 20305705 ~ 20306904 (+) True G1524124
TU1745087 other upstream 411890 20206492 ~ 20235180 (+) False LOC110495784
TU1744971 other upstream 570758 20066254 ~ 20076312 (+) True LOC110495776
TU1744968 other upstream 613425 20015948 ~ 20033645 (+) True LOC110495777
TU1746485 other downstream 109301 20756691 ~ 20757412 (+) True G1525320
TU1748777 other downstream 1952023 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other downstream 1952107 22599497 ~ 22611452 (+) True LOC110497098
TU1749630 other downstream 2511443 23158833 ~ 23161291 (+) True G1528194
TU1751373 other downstream 3873345 24520735 ~ 24522946 (+) False LOC110495887

Expression Profile