RNA id: TU1746357


Basic Information

Item Value
RNA id TU1746357
length 223
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1525195
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20650182 ~ 20650404 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGAaatagtcaaccctgttacagtcaacactttatttggcacttaataggcaccTACAGTCATTCTTTTATTTAACtgcttgagatgggaaaacatgttttttattaggttgaacatgtgctctttatgacagaatgttaaaaagAGGTCAAATCCAACCGTTTCTTTTGTTgccaagttacacttctcaaaataatacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1746314 lncRNA downstream 34143 20615786 ~ 20616039 (-) True G1525152
TU1746291 lncRNA downstream 95372 20553923 ~ 20554810 (-) True G1525132
TU1746260 lncRNA downstream 118883 20531025 ~ 20531299 (-) True G1525107
TU1746258 lncRNA downstream 122018 20527718 ~ 20528164 (-) True G1525105
TU1746182 lncRNA downstream 348787 20300556 ~ 20301395 (-) False G1525035
TU1746417 lncRNA upstream 42408 20692812 ~ 20693057 (-) True G1525255
TU1746425 lncRNA upstream 43165 20693569 ~ 20694149 (-) True G1525260
TU1746430 lncRNA upstream 54224 20704628 ~ 20704830 (-) True G1525265
TU1746433 lncRNA upstream 56273 20706677 ~ 20707081 (-) True G1525268
TU1746444 lncRNA upstream 64771 20715175 ~ 20715387 (-) True G1525279
XM_021571235.2 mRNA downstream 29463 20616734 ~ 20620719 (-) False LOC110495796
XM_021571236.2 mRNA downstream 29463 20616734 ~ 20620719 (-) True LOC110495796
XM_036952241.1 mRNA downstream 54429 20558557 ~ 20595753 (-) False LOC110497093
XM_036952242.1 mRNA downstream 54429 20558557 ~ 20595753 (-) False LOC110497093
XM_021571223.2 mRNA downstream 126307 20468182 ~ 20523875 (-) True LOC110495793
XR_005037407.1 mRNA upstream 136669 20787073 ~ 20835521 (-) True LOC118941121
XM_021571239.2 mRNA upstream 205020 20855424 ~ 20863001 (-) True zgc:92027
XM_036952254.1 mRNA upstream 250098 20900502 ~ 20943841 (-) False LOC110495804
XM_036952253.1 mRNA upstream 250098 20900502 ~ 20947382 (-) False LOC110495804
XM_021571242.2 mRNA upstream 250098 20900502 ~ 20947386 (-) False LOC110495804
TU1746271 other downstream 78315 20571096 ~ 20571867 (-) True LOC110497093
TU1745849 other downstream 920114 19722745 ~ 19730068 (-) False G1524755
TU1745850 other downstream 924651 19723434 ~ 19725531 (-) True G1524755
TU1745684 other downstream 1073082 19573628 ~ 19577100 (-) True LOC110495764
TU1745534 other downstream 1486056 19143985 ~ 19164126 (-) True G1524473
TU1748552 other upstream 1611652 22262056 ~ 22262462 (-) True G1527230
TU1749447 other upstream 2221641 22872045 ~ 22885833 (-) True G1528018
TU1750411 other upstream 2509154 23159558 ~ 23168591 (-) True LOC110495841
TU1750687 other upstream 2831136 23481540 ~ 23541256 (-) True LOC110495851
TU1750685 other upstream 2892202 23542606 ~ 23543493 (-) True LOC110495852

Expression Profile