RNA id: TU1746450


Basic Information

Item Value
RNA id TU1746450
length 317
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G1525285
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20719370 ~ 20719686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtaaatggacatttatggatataaatggcatattattgaaaaaaaaaaatgtactgtgtaacatgtcatattactgtcatctgatgaagattttcaaaaggttagtgaacaatttattttttaatcctgcgtttgttgattgcatgttttggctattcaaatgagctgtgtctggtggtggtttgacatatatatgtgctatgttttcgccgtaaaacattttagaaatctgacttgctggctagatgaacaaggtgtttatctttcatttgagctattggacttgttaatgtgtggaggttaaatatttttaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1746440 lncRNA upstream 7003 20712160 ~ 20712367 (+) True G1525275
TU1746420 lncRNA upstream 25544 20693564 ~ 20693826 (+) True LOC110495797
TU1746416 lncRNA upstream 27044 20692107 ~ 20692326 (+) True G1525254
TU1746385 lncRNA upstream 48492 20670629 ~ 20670878 (+) True G1525223
TU1746373 lncRNA upstream 56389 20662698 ~ 20662981 (+) True G1525211
TU1746456 lncRNA downstream 5301 20724987 ~ 20725206 (+) True G1525291
TU1746464 lncRNA downstream 14693 20734379 ~ 20735018 (+) True G1525299
TU1746482 lncRNA downstream 32295 20751981 ~ 20752210 (+) True G1525317
TU1746538 lncRNA downstream 119911 20839597 ~ 20841467 (+) True G1525371
TU1746541 lncRNA downstream 126556 20846242 ~ 20846619 (+) True G1525374
XM_021571237.2 mRNA upstream 23039 20663411 ~ 20696331 (+) False LOC110495797
XM_036952246.1 mRNA upstream 105241 20604886 ~ 20614129 (+) False LOC110495795
XM_036952251.1 mRNA downstream 66383 20786069 ~ 20852072 (+) False LOC110495798
XM_036952248.1 mRNA downstream 66383 20786069 ~ 20855643 (+) False LOC110495798
XM_036952249.1 mRNA downstream 66383 20786069 ~ 20855643 (+) False LOC110495798
XM_036952250.1 mRNA downstream 66383 20786069 ~ 20855643 (+) True LOC110495798
XM_036952252.1 mRNA downstream 152814 20872500 ~ 20885233 (+) True LOC110497094
TU1745224 other upstream 235657 20473360 ~ 20483713 (+) True G1524181
TU1745162 other upstream 412466 20305705 ~ 20306904 (+) True G1524124
TU1745087 other upstream 484190 20206492 ~ 20235180 (+) False LOC110495784
TU1744971 other upstream 643058 20066254 ~ 20076312 (+) True LOC110495776
TU1744968 other upstream 685725 20015948 ~ 20033645 (+) True LOC110495777
TU1746485 other downstream 37005 20756691 ~ 20757412 (+) True G1525320
TU1748777 other downstream 1879727 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other downstream 1879811 22599497 ~ 22611452 (+) True LOC110497098
TU1749630 other downstream 2439147 23158833 ~ 23161291 (+) True G1528194
TU1751373 other downstream 3801049 24520735 ~ 24522946 (+) False LOC110495887

Expression Profile