RNA id: TU1746477


Basic Information

Item Value
RNA id TU1746477
length 249
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G1525312
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20748190 ~ 20748438 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccgggggcaaactacctgccctccaggacacctacaccacccgatgttacaggaaggccataaagatcatcaaggacatcaaccacccgagccactgcctgttcaccccgctatcatccagaaggcgaggtcagtacaggtgcatcaaagctgggactgagagactgaaaaacagcttctatctcaaggccatcagactgttaaacagccaccactaacattgagtggctgctgccaacacactgacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1746462 lncRNA downstream 19038 20728920 ~ 20729152 (-) True G1525297
TU1746444 lncRNA downstream 32803 20715175 ~ 20715387 (-) True G1525279
TU1746433 lncRNA downstream 41109 20706677 ~ 20707081 (-) True G1525268
TU1746430 lncRNA downstream 43360 20704628 ~ 20704830 (-) True G1525265
TU1746425 lncRNA downstream 54041 20693569 ~ 20694149 (-) True G1525260
TU1746796 lncRNA upstream 143631 20892069 ~ 20892347 (-) True G1525597
TU1746864 lncRNA upstream 275908 21024346 ~ 21024693 (-) True G1525645
TU1746865 lncRNA upstream 276379 21024817 ~ 21025196 (-) True G1525646
TU1746868 lncRNA upstream 281595 21030033 ~ 21030807 (-) True G1525649
TU1746869 lncRNA upstream 282770 21031208 ~ 21031411 (-) True G1525650
XM_021571235.2 mRNA downstream 127471 20616734 ~ 20620719 (-) False LOC110495796
XM_021571236.2 mRNA downstream 127471 20616734 ~ 20620719 (-) True LOC110495796
XM_036952241.1 mRNA downstream 152437 20558557 ~ 20595753 (-) False LOC110497093
XM_036952242.1 mRNA downstream 152437 20558557 ~ 20595753 (-) False LOC110497093
XM_021571223.2 mRNA downstream 224315 20468182 ~ 20523875 (-) True LOC110495793
XR_005037407.1 mRNA upstream 38635 20787073 ~ 20835521 (-) True LOC118941121
XM_021571239.2 mRNA upstream 106986 20855424 ~ 20863001 (-) True zgc:92027
XM_036952254.1 mRNA upstream 152064 20900502 ~ 20943841 (-) False LOC110495804
XM_036952253.1 mRNA upstream 152064 20900502 ~ 20947382 (-) False LOC110495804
XM_021571242.2 mRNA upstream 152064 20900502 ~ 20947386 (-) False LOC110495804
TU1746271 other downstream 176323 20571096 ~ 20571867 (-) True LOC110497093
TU1745849 other downstream 1018122 19722745 ~ 19730068 (-) False G1524755
TU1745850 other downstream 1022659 19723434 ~ 19725531 (-) True G1524755
TU1745684 other downstream 1171090 19573628 ~ 19577100 (-) True LOC110495764
TU1745534 other downstream 1584064 19143985 ~ 19164126 (-) True G1524473
TU1748552 other upstream 1513618 22262056 ~ 22262462 (-) True G1527230
TU1749447 other upstream 2123607 22872045 ~ 22885833 (-) True G1528018
TU1750411 other upstream 2411120 23159558 ~ 23168591 (-) True LOC110495841
TU1750687 other upstream 2733102 23481540 ~ 23541256 (-) True LOC110495851
TU1750685 other upstream 2794168 23542606 ~ 23543493 (-) True LOC110495852

Expression Profile