RNA id: TU1746482


Basic Information

Item Value
RNA id TU1746482
length 230
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1525317
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20751981 ~ 20752210 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgtggactgatacttccctttctctcaaacCGACGTGGACTAatacttccctttctctcaaactgatgtggactgatacttccctttctctcaaaccgatgtggactgatacttccctttctctcaaaccgacgtggactgatacttccctttctctcaaacCGATGTGGACTGAcacttccctttctctcaaactgatgtggactgatacttccctttctctcaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1746464 lncRNA upstream 16963 20734379 ~ 20735018 (+) True G1525299
TU1746456 lncRNA upstream 26775 20724987 ~ 20725206 (+) True G1525291
TU1746450 lncRNA upstream 32295 20719370 ~ 20719686 (+) True G1525285
TU1746440 lncRNA upstream 39614 20712160 ~ 20712367 (+) True G1525275
TU1746420 lncRNA upstream 58155 20693564 ~ 20693826 (+) True LOC110495797
TU1746538 lncRNA downstream 87387 20839597 ~ 20841467 (+) True G1525371
TU1746541 lncRNA downstream 94032 20846242 ~ 20846619 (+) True G1525374
TU1746544 lncRNA downstream 113691 20865901 ~ 20866260 (+) True G1525377
TU1746553 lncRNA downstream 134518 20886728 ~ 20886941 (+) True G1525384
TU1746557 lncRNA downstream 140477 20892687 ~ 20893022 (+) False LOC118941068
XM_021571237.2 mRNA upstream 55650 20663411 ~ 20696331 (+) False LOC110495797
XM_036952246.1 mRNA upstream 137852 20604886 ~ 20614129 (+) False LOC110495795
XM_036952251.1 mRNA downstream 33859 20786069 ~ 20852072 (+) False LOC110495798
XM_036952248.1 mRNA downstream 33859 20786069 ~ 20855643 (+) False LOC110495798
XM_036952249.1 mRNA downstream 33859 20786069 ~ 20855643 (+) False LOC110495798
XM_036952250.1 mRNA downstream 33859 20786069 ~ 20855643 (+) True LOC110495798
XM_036952252.1 mRNA downstream 120290 20872500 ~ 20885233 (+) True LOC110497094
TU1745224 other upstream 268268 20473360 ~ 20483713 (+) True G1524181
TU1745162 other upstream 445077 20305705 ~ 20306904 (+) True G1524124
TU1745087 other upstream 516801 20206492 ~ 20235180 (+) False LOC110495784
TU1744971 other upstream 675669 20066254 ~ 20076312 (+) True LOC110495776
TU1744968 other upstream 718336 20015948 ~ 20033645 (+) True LOC110495777
TU1746485 other downstream 4481 20756691 ~ 20757412 (+) True G1525320
TU1748777 other downstream 1847203 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other downstream 1847287 22599497 ~ 22611452 (+) True LOC110497098
TU1749630 other downstream 2406623 23158833 ~ 23161291 (+) True G1528194
TU1751373 other downstream 3768525 24520735 ~ 24522946 (+) False LOC110495887

Expression Profile