RNA id: TU1746538


Basic Information

Item Value
RNA id TU1746538
length 1744
lncRNA type intronic
GC content 0.42
exon number 2
gene id G1525371
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20839597 ~ 20841467 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catgcGCCAAGCAAGTGTTACAAGCTAAGCATTGTATAAACTGCTCATTTTTCACtaagccaatgagcttcagcaaAACGCAGTGACACAATAGGGTCATGCTCAGTCATTGCTGatgcatgccagatcttacaacgcctggataAGTATTTTGCgcatcagctaaccacatcatacagtatgttatagcaatctgtgcCTGACGTTACAGTTGATGACATGGCAGGCAACCATTGGTTGACGCATccaacgtctgagcaggggaaaACCACAGGTGTGTTGAAAGAGATGGGTTAATAAAGACTCAGCACGTTCACCAACGGTAAAGTTACACACACAATTATTGCTCTATTTATCGCAGTCACGTATTTCTGTACTAATTCTATTGTGGATTAGTAATTGCAATTAGTGTGcaatcaacagagagagagagagagcaataaacAAGGAATTGTATCTGTAAAATAAAATGTTGCATCAAGGTAAGAGGAAAGACTAGGTGCTTGTCCTGCCCAGGTTTGGACAAAGCCGTATTGACATCATGTGACAATAGAGATCTAGGCCAAGAGCCAGGTACACGCACACACGTTGGTATCTCTGGAGGTGACAGGACAGGATATCACTGCCATACCAACACCGTAAACTGACAGGTCTGCGCATAGGGAAGTCAGGTGTAAAATAATGATATAACTGAGCCTCTTGGTCATTCCAGGTCAGCCATATAAACATTCACACTACCTCCATGTTGTCATATAGTCACAGCCCTATAGACATTCACACTACCTCCATGTTGTCATACAGTCAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCACAGCCCTATATACATTaacactacctccatgttgtCATATAGTCACAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCACAGCCCTATAGACATTCACACTACCTCCATTTTGACATATAGTCACAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCACAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCACAGCCCTATAAACAGTCACACTACCTCCATGTTGTCATTTAGTCAGCCCTATAAACAGTCACACTACCTCCATGTTGTCATTTAGTCAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCACAGCCCTATAAACAGTCACACTACCTCCATGTTGTCATATAGTCAGCCCTATAAACAGTCACACTACCTCCATGTTGTCATTTAGTCAGCCCTATAGACATTCACACTACCTCCATGTTGTCATTTAGTCAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCACAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCAGACCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCACAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCAGCCCTATAGACAGTCACACTACCTCCATGTTGTCATATAGTCAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCAGCCCTATAAACATtcacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1746482 lncRNA upstream 87387 20751981 ~ 20752210 (+) True G1525317
TU1746464 lncRNA upstream 104579 20734379 ~ 20735018 (+) True G1525299
TU1746456 lncRNA upstream 114391 20724987 ~ 20725206 (+) True G1525291
TU1746450 lncRNA upstream 119911 20719370 ~ 20719686 (+) True G1525285
TU1746440 lncRNA upstream 127230 20712160 ~ 20712367 (+) True G1525275
TU1746541 lncRNA downstream 4775 20846242 ~ 20846619 (+) True G1525374
TU1746544 lncRNA downstream 24434 20865901 ~ 20866260 (+) True G1525377
TU1746553 lncRNA downstream 45261 20886728 ~ 20886941 (+) True G1525384
TU1746557 lncRNA downstream 51220 20892687 ~ 20893022 (+) False LOC118941068
TU1746559 lncRNA downstream 52026 20893493 ~ 20894143 (+) False LOC118941068
XM_021571237.2 mRNA upstream 143266 20663411 ~ 20696331 (+) False LOC110495797
XM_036952246.1 mRNA upstream 225468 20604886 ~ 20614129 (+) False LOC110495795
XM_036952252.1 mRNA downstream 31033 20872500 ~ 20885233 (+) True LOC110497094
NM_001124698.1 mRNA downstream 45984 20887451 ~ 20890292 (+) True gcg1
LOC118941068 mRNA downstream 49242 20890709 ~ 20900107 (+) False LOC118941068
XM_036952263.1 mRNA downstream 127813 20969280 ~ 20979259 (+) False LOC110495810
XM_036952262.1 mRNA downstream 135032 20976499 ~ 20979259 (+) False LOC110495810
TU1746485 other upstream 82185 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 355884 20473360 ~ 20483713 (+) True G1524181
TU1745162 other upstream 532693 20305705 ~ 20306904 (+) True G1524124
TU1745087 other upstream 604417 20206492 ~ 20235180 (+) False LOC110495784
TU1744971 other upstream 763285 20066254 ~ 20076312 (+) True LOC110495776
TU1748777 other downstream 1757946 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other downstream 1758030 22599497 ~ 22611452 (+) True LOC110497098
TU1749630 other downstream 2317366 23158833 ~ 23161291 (+) True G1528194
TU1751373 other downstream 3679268 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 4163294 25004761 ~ 25005609 (+) True G1530367

Expression Profile