RNA id: TU1746553


Basic Information

Item Value
RNA id TU1746553
length 214
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G1525384
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20886728 ~ 20886941 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcctacaatgtagaaaattgtaaaaataaagaaaaacccttgaacgagtaggtgtgtccaaacgagACTGGTACTATATAATCAAAATCAAAATGACTTTGGTTTGACATAATAATTGGATATCATCTGTAAATGGTTTATAAGTACATTCAGTAAACGGTAATGCAGGTATAGGCTTTGAAAAACACATGAATTCATGTTATCTAAAAGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1746544 lncRNA upstream 20468 20865901 ~ 20866260 (+) True G1525377
TU1746541 lncRNA upstream 40109 20846242 ~ 20846619 (+) True G1525374
TU1746538 lncRNA upstream 45261 20839597 ~ 20841467 (+) True G1525371
TU1746482 lncRNA upstream 134518 20751981 ~ 20752210 (+) True G1525317
TU1746464 lncRNA upstream 151710 20734379 ~ 20735018 (+) True G1525299
TU1746557 lncRNA downstream 5746 20892687 ~ 20893022 (+) False LOC118941068
TU1746559 lncRNA downstream 6552 20893493 ~ 20894143 (+) False LOC118941068
TU1746563 lncRNA downstream 9977 20896918 ~ 20897122 (+) True G1525392
TU1746586 lncRNA downstream 12392 20899333 ~ 20899884 (+) True LOC118941068
TU1746627 lncRNA downstream 68936 20955877 ~ 20957111 (+) True G1525436
XM_036952252.1 mRNA upstream 1495 20872500 ~ 20885233 (+) True LOC110497094
XM_036952248.1 mRNA upstream 31085 20786069 ~ 20855643 (+) False LOC110495798
XM_036952249.1 mRNA upstream 31085 20786069 ~ 20855643 (+) False LOC110495798
XM_036952250.1 mRNA upstream 31085 20786069 ~ 20855643 (+) True LOC110495798
XM_036952251.1 mRNA upstream 34656 20786069 ~ 20852072 (+) False LOC110495798
NM_001124698.1 mRNA downstream 510 20887451 ~ 20890292 (+) True gcg1
LOC118941068 mRNA downstream 3768 20890709 ~ 20900107 (+) False LOC118941068
XM_036952263.1 mRNA downstream 82339 20969280 ~ 20979259 (+) False LOC110495810
XM_036952262.1 mRNA downstream 89558 20976499 ~ 20979259 (+) False LOC110495810
XM_021571255.2 mRNA downstream 89742 20976683 ~ 20979259 (+) True LOC110495810
TU1746485 other upstream 129316 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 403015 20473360 ~ 20483713 (+) True G1524181
TU1745162 other upstream 579824 20305705 ~ 20306904 (+) True G1524124
TU1745087 other upstream 651548 20206492 ~ 20235180 (+) False LOC110495784
TU1744971 other upstream 810416 20066254 ~ 20076312 (+) True LOC110495776
TU1748777 other downstream 1712472 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other downstream 1712556 22599497 ~ 22611452 (+) True LOC110497098
TU1749630 other downstream 2271892 23158833 ~ 23161291 (+) True G1528194
TU1751373 other downstream 3633794 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 4117820 25004761 ~ 25005609 (+) True G1530367

Expression Profile