RNA id: TU1746563


Basic Information

Item Value
RNA id TU1746563
length 205
lncRNA type intronic
GC content 0.44
exon number 1
gene id G1525392
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20896918 ~ 20897122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttttcgattgctaaacaacagtgggcacaactggagtcacatgtgcaaaactctaactacagtctgcactaccaacagtcacctgagctaaacagttcacatcacctgcaaaactcattccaagcaacacaactcttaacacatggctcaaaacacgctcagtgcagccaaacactatgcacaaccctcactgagataacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1746559 lncRNA upstream 2775 20893493 ~ 20894143 (+) False LOC118941068
TU1746557 lncRNA upstream 3896 20892687 ~ 20893022 (+) False LOC118941068
TU1746553 lncRNA upstream 9977 20886728 ~ 20886941 (+) True G1525384
TU1746544 lncRNA upstream 30658 20865901 ~ 20866260 (+) True G1525377
TU1746541 lncRNA upstream 50299 20846242 ~ 20846619 (+) True G1525374
TU1746586 lncRNA downstream 2211 20899333 ~ 20899884 (+) True LOC118941068
TU1746627 lncRNA downstream 58755 20955877 ~ 20957111 (+) True G1525436
TU1746588 lncRNA downstream 124647 21021769 ~ 21022152 (+) True G1525406
TU1746651 lncRNA downstream 128781 21025903 ~ 21026132 (+) True G1525460
TU1746653 lncRNA downstream 130847 21027969 ~ 21028343 (+) True G1525462
NM_001124698.1 mRNA upstream 6626 20887451 ~ 20890292 (+) True gcg1
XM_036952252.1 mRNA upstream 11685 20872500 ~ 20885233 (+) True LOC110497094
XM_036952248.1 mRNA upstream 41275 20786069 ~ 20855643 (+) False LOC110495798
XM_036952263.1 mRNA downstream 72158 20969280 ~ 20979259 (+) False LOC110495810
XM_036952262.1 mRNA downstream 79377 20976499 ~ 20979259 (+) False LOC110495810
XM_021571255.2 mRNA downstream 79561 20976683 ~ 20979259 (+) True LOC110495810
XM_036952261.1 mRNA downstream 82927 20980049 ~ 21009540 (+) False LOC110495811
XM_036952260.1 mRNA downstream 82927 20980049 ~ 21013013 (+) False LOC110495811
TU1746485 other upstream 139506 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 413205 20473360 ~ 20483713 (+) True G1524181
TU1745162 other upstream 590014 20305705 ~ 20306904 (+) True G1524124
TU1745087 other upstream 661738 20206492 ~ 20235180 (+) False LOC110495784
TU1744971 other upstream 820606 20066254 ~ 20076312 (+) True LOC110495776
TU1748777 other downstream 1702291 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other downstream 1702375 22599497 ~ 22611452 (+) True LOC110497098
TU1749630 other downstream 2261711 23158833 ~ 23161291 (+) True G1528194
TU1751373 other downstream 3623613 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 4107639 25004761 ~ 25005609 (+) True G1530367

Expression Profile