RNA id: TU1746661



Basic Information


Item Value
RNA id TU1746661
length 1061
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1525470
representative False

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 21070867 ~ 21073268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCGCAATTCACTTCATAGAAACAAATTGTTTTTTTATTACAACATTTCACTGTTTCCATTATTGGTAATGGTATGTGGTAGATTAACATGACTGCTGGGAATTTAGAAAACTCCAAATAATTTGATCGACTGCAGAACACATGGAATTAATTTCCAGTAATGATCTTTTTTCCTTACAATATTAAACAATTCAGAGACAGGGTGCAACACAAAAAGCTTATCCCAAATCACATCGATAAAAAAGGTCACCGTACAATAAACGTTTTAAAAACATCAACGTAAATAAAGTCCACGCGAGTATCTCCCAAGACTAGATGGATTATGTTTTTTCATCCTTGGTTcgataaaaaaaatatctgacaGAAAACTTGTATTAACCGATGGGTATGTTAATCATATTaccagtgtaaaaacaaaaaaaggttTTGCATTTTTCCGAAACTAAAATATAAAAAGCCGGAGACCGTTGGGGCGTGTGTTACCAGGTCGACAAGAGGCCACACAGGAAATTGGATGTCGAACGAGAGACGCAACTTCCTAGATCCAAGGCCACGCCCACATCCTGTAGCCCTCTCTACCCCGTGTTGATGTTTGGACACCACACCCGACAACTTTGCTACCGTTCACCGTACCGCCCCTGGTTGGTTGGTAGTACTTCCTCATTCCTGGCCTGGCTAGGCGAGGGCCTGCTCCTCTATtggtggaggtggtaggaggggcggggtcagctcctgGACATGGATGGTCATCCATCGCAGTGCAGCTTTGTGTTGTTGGTCGGTTTTCTCTTGACAAGTTATACAGCTAAAAAGAAGTGAGTGAAAAGAAGGCAATGCAGGAGGAGGGGGTGTACAGTGCATGACGGAGGGATGGTCTTCACGACGACGCCTGCTTCTCCTGTTCAATGgctgggaaTTTCTTTAGTCGGCAGCGGATTCTTCTCCTGCGTCTCGGTCTTTTTCAGCTTGGTCTTGTCGAAGCTGGCGACCTCCTCGAGATTTGGCTTGTCAGACATGATTGCGAAGAATCTGTCAAAACGAGAAgcattgttttaattaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1746678 lncRNA upstream 18328 21051945 ~ 21052539 (+) True G1525481
TU1746657 lncRNA upstream 35064 21035558 ~ 21035803 (+) True G1525466
TU1746655 lncRNA upstream 40325 21030039 ~ 21030542 (+) True G1525464
TU1746654 lncRNA upstream 40967 21029649 ~ 21029900 (+) True G1525463
TU1746653 lncRNA upstream 42524 21027969 ~ 21028343 (+) True G1525462
TU1746696 lncRNA downstream 16622 21088918 ~ 21089136 (+) True G1525499
TU1746698 lncRNA downstream 17020 21089316 ~ 21090217 (+) True G1525500
TU1746700 lncRNA downstream 21567 21093863 ~ 21094264 (+) True G1525502
TU1746941 lncRNA downstream 82717 21155013 ~ 21155431 (+) True G1525722
TU1747011 lncRNA downstream 172530 21244826 ~ 21245657 (+) True G1525791
XM_036952260.1 mRNA upstream 57854 20980049 ~ 21013013 (+) False LOC110495811
XM_036952258.1 mRNA upstream 57854 20988349 ~ 21013013 (+) True LOC110495811
XM_036952261.1 mRNA upstream 61327 20980049 ~ 21009540 (+) False LOC110495811
XM_036952259.1 mRNA upstream 61327 20988349 ~ 21009540 (+) False LOC110495811
XM_021571255.2 mRNA upstream 91608 20976683 ~ 20979259 (+) True LOC110495810
XM_021571270.2 mRNA downstream 104329 21176625 ~ 21257700 (+) False LOC110495817
XM_021571269.2 mRNA downstream 104333 21176629 ~ 21257700 (+) False LOC110495817
XM_021571271.2 mRNA downstream 139456 21211752 ~ 21257700 (+) False LOC110495817
XM_021571275.2 mRNA downstream 224900 21297196 ~ 21333742 (+) False LOC110495818
XM_021571273.2 mRNA downstream 224901 21297197 ~ 21333742 (+) False LOC110495818
TU1746485 other upstream 313455 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 587154 20473360 ~ 20483713 (+) True G1524181
TU1745162 other upstream 763963 20305705 ~ 20306904 (+) True G1524124
TU1745087 other upstream 835687 20206492 ~ 20235180 (+) False LOC110495784
TU1744971 other upstream 994555 20066254 ~ 20076312 (+) True LOC110495776
TU1748777 other downstream 1527117 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other downstream 1527201 22599497 ~ 22611452 (+) True LOC110497098
TU1749630 other downstream 2086537 23158833 ~ 23161291 (+) True G1528194
TU1751373 other downstream 3448439 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 3932465 25004761 ~ 25005609 (+) True G1530367

Expression Profile