RNA id: TU1746696


Basic Information

Item Value
RNA id TU1746696
length 219
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1525499
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 21088918 ~ 21089136 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTCACAGTCCCCCCCCCTTTACCCTTTAAGGCTTTTCGATCTGTGTGTTTTAACTTGATTTAACTCTGAGATTGTAGTCAGATGATACCTCAAGTGCCTCTTTTATCCACACACAGAAACCTTTGTCAACGCCTTGGTGATACACTCCCTCTTACTATGCTCACATGAGAAGCATCACGCTAGGAAAGAAGGGCCTCCTGTTCATTTGAAATGAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1746664 lncRNA upstream 15650 21070867 ~ 21073268 (+) False G1525470
TU1746665 lncRNA upstream 15650 21070867 ~ 21073268 (+) False G1525470
TU1746666 lncRNA upstream 15650 21070867 ~ 21073268 (+) True G1525470
TU1746661 lncRNA upstream 16622 21070867 ~ 21072296 (+) False G1525470
TU1746663 lncRNA upstream 16622 21070867 ~ 21072296 (+) False G1525470
TU1746698 lncRNA downstream 180 21089316 ~ 21090217 (+) True G1525500
TU1746700 lncRNA downstream 4727 21093863 ~ 21094264 (+) True G1525502
TU1746941 lncRNA downstream 65877 21155013 ~ 21155431 (+) True G1525722
TU1747011 lncRNA downstream 155690 21244826 ~ 21245657 (+) True G1525791
TU1746965 lncRNA downstream 166632 21255768 ~ 21257618 (+) True LOC110495817
XM_036952260.1 mRNA upstream 75905 20980049 ~ 21013013 (+) False LOC110495811
XM_036952258.1 mRNA upstream 75905 20988349 ~ 21013013 (+) True LOC110495811
XM_036952261.1 mRNA upstream 79378 20980049 ~ 21009540 (+) False LOC110495811
XM_036952259.1 mRNA upstream 79378 20988349 ~ 21009540 (+) False LOC110495811
XM_021571255.2 mRNA upstream 109659 20976683 ~ 20979259 (+) True LOC110495810
XM_021571270.2 mRNA downstream 87489 21176625 ~ 21257700 (+) False LOC110495817
XM_021571269.2 mRNA downstream 87493 21176629 ~ 21257700 (+) False LOC110495817
XM_021571271.2 mRNA downstream 122616 21211752 ~ 21257700 (+) False LOC110495817
XM_021571275.2 mRNA downstream 208060 21297196 ~ 21333742 (+) False LOC110495818
XM_021571273.2 mRNA downstream 208061 21297197 ~ 21333742 (+) False LOC110495818
TU1746485 other upstream 331506 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 605205 20473360 ~ 20483713 (+) True G1524181
TU1745162 other upstream 782014 20305705 ~ 20306904 (+) True G1524124
TU1745087 other upstream 853738 20206492 ~ 20235180 (+) False LOC110495784
TU1744971 other upstream 1012606 20066254 ~ 20076312 (+) True LOC110495776
TU1748777 other downstream 1510277 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other downstream 1510361 22599497 ~ 22611452 (+) True LOC110497098
TU1749630 other downstream 2069697 23158833 ~ 23161291 (+) True G1528194
TU1751373 other downstream 3431599 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 3915625 25004761 ~ 25005609 (+) True G1530367

Expression Profile