RNA id: TU1747531


Basic Information

Item Value
RNA id TU1747531
length 348
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G1526294
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 21614465 ~ 21617563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cactgtcacgccctgaccatagtttactttgtattttctatgttttgattggtcagggtgtgatctgagtgggcattctatgttacatgtctagtttgtctagttctatgttcggcctgatatggttctcaatcagaggcaggtgttcgtcattgtctctgattgggaaccatatttaggtagcctgggtttcactgtgtgtttgtgggtgattgttcctgtctatgtgttttcaccagataggctgtttaggtttccgttacgtttattgtttttgtagtgtttgtgtttagtgtgtttttcattaaacatgaatcgcaatcgacacgctgcattttggtccgactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1747405 lncRNA upstream 88483 21524132 ~ 21525982 (+) True G1526170
TU1747279 lncRNA upstream 211796 21402298 ~ 21402669 (+) True G1526049
TU1747248 lncRNA upstream 233411 21380613 ~ 21381054 (+) True G1526018
TU1747208 lncRNA upstream 257046 21357218 ~ 21357419 (+) True G1525979
TU1746965 lncRNA upstream 356847 21255768 ~ 21257618 (+) True LOC110495817
TU1747536 lncRNA downstream 5022 21622585 ~ 21622815 (+) True G1526299
TU1747541 lncRNA downstream 9630 21627193 ~ 21627423 (+) True G1526304
TU1747766 lncRNA downstream 122890 21740453 ~ 21740837 (+) True G1526520
TU1747778 lncRNA downstream 133886 21751449 ~ 21751709 (+) True G1526532
TU1747847 lncRNA downstream 178161 21795724 ~ 21796188 (+) True G1526601
XM_021571275.2 mRNA upstream 280723 21297196 ~ 21333742 (+) False LOC110495818
XM_021571273.2 mRNA upstream 280723 21297197 ~ 21333742 (+) False LOC110495818
XM_036952268.1 mRNA upstream 280723 21297197 ~ 21333742 (+) True LOC110495818
XM_021571269.2 mRNA upstream 356765 21176629 ~ 21257700 (+) False LOC110495817
XM_021571277.2 mRNA downstream 309090 21926653 ~ 21939273 (+) True LOC110495820
XM_021571278.2 mRNA downstream 502214 22119777 ~ 22125450 (+) True LOC110495821
XM_021571279.2 mRNA downstream 858211 22475774 ~ 22477639 (+) True LOC110495822
XM_021571283.2 mRNA downstream 949105 22566668 ~ 22596390 (+) False LOC110495826
XM_021571285.2 mRNA downstream 949105 22566668 ~ 22596390 (+) False LOC110495826
TU1746485 other upstream 857053 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 1130752 20473360 ~ 20483713 (+) True G1524181
TU1745162 other upstream 1307561 20305705 ~ 20306904 (+) True G1524124
TU1745087 other upstream 1379285 20206492 ~ 20235180 (+) False LOC110495784
TU1744971 other upstream 1538153 20066254 ~ 20076312 (+) True LOC110495776
TU1748777 other downstream 981850 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other downstream 981934 22599497 ~ 22611452 (+) True LOC110497098
TU1749630 other downstream 1541270 23158833 ~ 23161291 (+) True G1528194
TU1751373 other downstream 2903172 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 3387198 25004761 ~ 25005609 (+) True G1530367