RNA id: TU1748734



Basic Information


Item Value
RNA id TU1748734
length 225
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1527395
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 22494430 ~ 22494654 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACCCTCAAGCAACCTCTGTAACCATTTATGGATGACGTTAGCAAAGCTTATTCTATAGTTCATCAGATAATGTTACACTGTGAAATACAGGACTATCAGATTGACCTTTACTTTGGCTAATCGAAGCCTCTGCTCCCAGAATAGGAAGTCACTTATTAAGAATCAACTCCACTGGTGCCAAGCTAAGCTTTTTGGTGCCACTTCTCCGATTCAAAAGGTCCTAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1748723 lncRNA upstream 13514 22480701 ~ 22480916 (+) True G1527384
TU1748678 lncRNA upstream 102624 22391407 ~ 22391806 (+) True G1527341
TU1748612 lncRNA upstream 182794 22303769 ~ 22311636 (+) False G1527279
TU1748737 lncRNA downstream 2518 22497172 ~ 22497382 (+) True G1527398
TU1748742 lncRNA downstream 6491 22501145 ~ 22501407 (+) True G1527403
TU1748793 lncRNA downstream 51402 22546056 ~ 22609747 (+) True G1527420
TU1749395 lncRNA downstream 376898 22871552 ~ 22885161 (+) True G1527970
TU1749410 lncRNA downstream 407089 22901743 ~ 22902638 (+) True G1527985
XM_021571279.2 mRNA upstream 16791 22475774 ~ 22477639 (+) True LOC110495822
XM_021571278.2 mRNA upstream 368980 22119777 ~ 22125450 (+) True LOC110495821
XM_021571277.2 mRNA upstream 555157 21926653 ~ 21939273 (+) True LOC110495820
XM_021571273.2 mRNA upstream 1160688 21297197 ~ 21333742 (+) False LOC110495818
XM_021571283.2 mRNA downstream 72014 22566668 ~ 22596390 (+) False LOC110495826
XM_021571285.2 mRNA downstream 72014 22566668 ~ 22596390 (+) False LOC110495826
XM_021571287.2 mRNA downstream 72017 22566671 ~ 22596390 (+) True LOC110495826
XM_036952270.1 mRNA downstream 104362 22599016 ~ 22641367 (+) False LOC110497098
XM_036952271.1 mRNA downstream 104679 22599333 ~ 22641365 (+) False LOC110497098
TU1746485 other upstream 1737018 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 2010717 20473360 ~ 20483713 (+) True G1524181
TU1745162 other upstream 2187526 20305705 ~ 20306904 (+) True G1524124
TU1745087 other upstream 2259250 20206492 ~ 20235180 (+) False LOC110495784
TU1744971 other upstream 2418118 20066254 ~ 20076312 (+) True LOC110495776
TU1748777 other downstream 104759 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other downstream 104843 22599497 ~ 22611452 (+) True LOC110497098
TU1749630 other downstream 664179 23158833 ~ 23161291 (+) True G1528194
TU1751373 other downstream 2026081 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 2510107 25004761 ~ 25005609 (+) True G1530367

Expression Profile