RNA id: TU1750402


Basic Information

Item Value
RNA id TU1750402
length 467
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1528841
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 22997795 ~ 22998261 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actcgtcagtctatttttgttctgagaaatgaaggctattccatgcgagaaattgccaagaaactgaagatcacgtacaacgctgtgttctactcacttcacagaacagagcaaactggccctaaccagaatagaaagaggagtgggaggcccctgtgtaaaactgagcaagaggacaagtacattagagtgtctagtttgaaaacacaagtcctcaactggcagctttattaaatagtacccgcaaaacaccagtctcaacgtcaacagtgaagaggtgactccgggatgctggccttctaggcagagttgcaaagaaaaagccatatctcagactggccaataaaaagaaaagattaagacgggcaaaagaacacagacactggacagaggaactctgcctagaaggccagcatcccagagtagccttaatttctcagaacaagaatagactgatgagtttcaga

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1750401 lncRNA downstream 304 22995919 ~ 22997491 (-) True G1528840
TU1750439 lncRNA downstream 4869 22992702 ~ 22992926 (-) True G1528876
TU1750422 lncRNA downstream 6486 22966264 ~ 22991309 (-) True G1528860
TU1749487 lncRNA downstream 46020 22951561 ~ 22951775 (-) True G1528052
TU1749382 lncRNA downstream 136956 22860614 ~ 22860839 (-) True G1527957
TU1750459 lncRNA upstream 48437 23046698 ~ 23046921 (-) True G1528896
TU1750462 lncRNA upstream 52594 23050855 ~ 23051101 (-) True G1528899
TU1750466 lncRNA upstream 64425 23062686 ~ 23062961 (-) True G1528903
TU1750468 lncRNA upstream 65577 23063838 ~ 23064105 (-) True G1528905
TU1750469 lncRNA upstream 66000 23064261 ~ 23064513 (-) True G1528906
XM_021571308.2 mRNA downstream 20186 22964348 ~ 22977609 (-) True LOC110495838
XM_021571306.2 mRNA downstream 49105 22898570 ~ 22948690 (-) True LOC110495837
XM_036952277.1 mRNA downstream 49107 22897949 ~ 22948688 (-) False LOC110495837
XM_036952278.1 mRNA downstream 66872 22898570 ~ 22930923 (-) False LOC110495837
XR_002469479.2 mRNA downstream 138112 22853240 ~ 22859683 (-) True LOC110495836
XM_021571309.2 mRNA upstream 329 22998590 ~ 23007852 (-) True LOC110495839
XM_036952283.1 mRNA upstream 10286 23008547 ~ 23076119 (-) False LOC110495841
XM_036952281.1 mRNA upstream 10286 23008547 ~ 23110773 (-) False LOC110495841
XM_036952279.1 mRNA upstream 10286 23008547 ~ 23168441 (-) False LOC110495841
XM_036952280.1 mRNA upstream 10286 23008547 ~ 23168442 (-) False LOC110495841
TU1749447 other downstream 111962 22872045 ~ 22885833 (-) True G1528018
TU1748552 other downstream 735333 22262056 ~ 22262462 (-) True G1527230
TU1746271 other downstream 2425928 20571096 ~ 20571867 (-) True LOC110497093
TU1745849 other downstream 3267727 19722745 ~ 19730068 (-) False G1524755
TU1750411 other upstream 161297 23159558 ~ 23168591 (-) True LOC110495841
TU1750687 other upstream 483279 23481540 ~ 23541256 (-) True LOC110495851
TU1750685 other upstream 544345 23542606 ~ 23543493 (-) True LOC110495852
TU1751209 other upstream 1281477 24279738 ~ 24280446 (-) False LOC110497104
TU1751211 other upstream 1285330 24283591 ~ 24283994 (-) True LOC110497104

Expression Profile