RNA id: TU1750468



Basic Information


Item Value
RNA id TU1750468
length 268
lncRNA type intronic
GC content 0.48
exon number 1
gene id G1528905
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23063838 ~ 23064105 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aggtaaagccctgccttatctcagctcacttgtcaccatagcagcacccacccgtagcacgtgctccagcaggtatatttcactggtcatccccaaagccaactcctactttggccacctttccttccagttctctgctgccaatgactggaacgaattgcaaaaatcagagtcttatatctctctcactaactttaagcaccagctgtcagagaatcttaccgatcattgcacctgtacacagcccatctgtaaatagcctcgtACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1750466 lncRNA downstream 877 23062686 ~ 23062961 (-) True G1528903
TU1750462 lncRNA downstream 12737 23050855 ~ 23051101 (-) True G1528899
TU1750459 lncRNA downstream 16917 23046698 ~ 23046921 (-) True G1528896
TU1750402 lncRNA downstream 65577 22997795 ~ 22998261 (-) True G1528841
TU1750401 lncRNA downstream 66347 22995919 ~ 22997491 (-) True G1528840
TU1750469 lncRNA upstream 156 23064261 ~ 23064513 (-) True G1528906
TU1750474 lncRNA upstream 7909 23072014 ~ 23072273 (-) True G1528911
TU1750478 lncRNA upstream 14311 23078416 ~ 23078645 (-) True G1528915
TU1750527 lncRNA upstream 115018 23179123 ~ 23179322 (-) True G1528962
TU1750528 lncRNA upstream 115661 23179766 ~ 23180033 (-) True G1528963
XM_021571309.2 mRNA downstream 55986 22998590 ~ 23007852 (-) True LOC110495839
XM_021571308.2 mRNA downstream 86229 22964348 ~ 22977609 (-) True LOC110495838
XM_021571306.2 mRNA downstream 115148 22898570 ~ 22948690 (-) True LOC110495837
XM_036952277.1 mRNA downstream 115150 22897949 ~ 22948688 (-) False LOC110495837
XM_021571314.2 mRNA upstream 117714 23181819 ~ 23186607 (-) True LOC110495844
XM_021571315.2 mRNA upstream 149426 23213531 ~ 23223410 (-) True LOC110495845
XM_036952287.1 mRNA upstream 184935 23249040 ~ 23252371 (-) False LOC110495846
XM_021571317.2 mRNA upstream 184935 23249040 ~ 23264224 (-) False LOC110495846
XM_021571316.2 mRNA upstream 184935 23249040 ~ 23265087 (-) False LOC110495846
TU1749447 other downstream 178005 22872045 ~ 22885833 (-) True G1528018
TU1748552 other downstream 801376 22262056 ~ 22262462 (-) True G1527230
TU1746271 other downstream 2491971 20571096 ~ 20571867 (-) True LOC110497093
TU1745849 other downstream 3333770 19722745 ~ 19730068 (-) False G1524755
TU1750411 other upstream 95453 23159558 ~ 23168591 (-) True LOC110495841
TU1750687 other upstream 417435 23481540 ~ 23541256 (-) True LOC110495851
TU1750685 other upstream 478501 23542606 ~ 23543493 (-) True LOC110495852
TU1751209 other upstream 1215633 24279738 ~ 24280446 (-) False LOC110497104
TU1751211 other upstream 1219486 24283591 ~ 24283994 (-) True LOC110497104

Expression Profile