RNA id: TU1750780


Basic Information

Item Value
RNA id TU1750780
length 1729
lncRNA type antisense_over
GC content 0.38
exon number 3
gene id G1529193
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23565318 ~ 23570351 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAATCAACAGATATATGACATTTAAAGTGGTGTTTTTTCCAAATATATATTGAATGAAATGAATATGCTATCATATTTTGTTGTAATGTAATAAGGCATATGAATAGAATGAATTTGATTGCATATTATTTctgttctataacctgtaggaAGCTATGTGATAGTTTTATACTGTACTTGTCAATAGGCATGATTATTAACACTAGTACTGTTCTGACAGTGTAGCTAATTACCACTTAATCAAGAAAGAGCACGAGGGGTACATGCACATGCTAATTTATTTTAATGACATATTCACTCATCACTTTAAGAAAGATGTGAGAATCACACATTGACTGTGTTAATAAAGTGGACCTATCCATCAATGAAAAACTAGGGAAGATTATTACTGTGTATATTTACTGTGCTAAGTGGAAAATGTCTCCAAGCCACATGTACCTTcaggtagggctgggcgatatagcGTGAATACCGGTCTGGATCAACATGTCATCtatcaaaaaatgtttttatttttattaagtgCTAAATAACTGAACAGTTCAACACATTGGACTATTTCAATGTCACTTTTGTCCTTAAGAATAAAACCGTAATGAAGAAAGCCTGTTAAAATAACTTGTTGCCATTCCAGTCTCATGCACTAATAATAAAACACACTTGGATCTTGTATTATTCAGAAACATAAAATACAGTCAAATACCACCACACCGTTGTAAACTATAGTAATATagttttggccatatcgcccagccctatctTCACGTCAAAGCAAAACCATTTTTACTTCAAAGTAAACAATATCATTGCACGATACAATTGCCACTATTCCCTAAATATGTAGAATGAATTGGCACCGTTGTTAGAACATCACAAAAGGTTTCTATCTATCTATGGAATCAACGGCCACCATAACTTCATAACACTGAACCATATCCTGGTATGAGATCGAATGAAGTAGATTCATTGGCATTTTCTGTCTTCCATTCCAAACCATGTCTGCCTTCCCATGACAAGTGAACCACTTAGCACCCATGTTTCCATGTTTTTTTGGCAGAGCTTTCCGATCCTATTCAACATGGGAGCTGAATAGCGCGAGCCACAAACGTCTCCTTTGTGTGTCCCGTACAGTAGGCCTTGTTCACAAACAATCTTCAACAGCACCGAAACCATTTTTTACACCACAAATAGAAACTCCAGTGTACAGTACTGTTTCATAGTCACACAAATCATCTTCCAATTCAAGAACGATAATATAAACATGACAAGCATCAACAAGCTGTGTCGGTGGTCTGAGAACAACATTACACGGAGTAAAAAAACAaaagacaaataaataaataaatacatgaacaGAGAAGGTACCGTTGCATAATTACAAAACATAACAGTTGGGATGTACAGTAATGAGAGAAAGTGTGtcactcagggagagagagagagagagaacagaccgtAGAGTGAATggcatgtgtgtgggtgtgtgtatccACTGTTGTTTTCTACCCCAGATGgacctcttctgttctcctccctATTCCAGGTCTTCATCCTCAGGTGCGATGGTGCTCGTCTGTTCAGAGGTCACACCTgaaagacaacacacacacgcacacacacagAGCCAACGAACCAACGGGGTTCGGGGTCCTTACCTCTGAGATTCGGCTGAGAACCAATCAGCGCCATACATCTGTACAGGACCATGGACAGCAACCCCGAACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1750679 lncRNA downstream 160312 23404735 ~ 23405006 (-) True G1529099
TU1750669 lncRNA downstream 170835 23394173 ~ 23394483 (-) True G1529089
TU1750664 lncRNA downstream 176845 23388236 ~ 23388473 (-) True G1529084
TU1750663 lncRNA downstream 177557 23387506 ~ 23387761 (-) True G1529083
TU1750641 lncRNA downstream 208128 23356991 ~ 23357190 (-) True G1529062
TU1750798 lncRNA upstream 20650 23591001 ~ 23591228 (-) True G1529206
TU1750814 lncRNA upstream 43254 23613605 ~ 23614006 (-) True G1529222
TU1750857 lncRNA upstream 92260 23662611 ~ 23662833 (-) True G1529250
TU1750859 lncRNA upstream 94481 23664832 ~ 23666137 (-) True G1529252
TU1750861 lncRNA upstream 96702 23667053 ~ 23667325 (-) True G1529254
XM_021571326.2 mRNA downstream 21687 23542411 ~ 23543631 (-) False LOC110495852
XM_021571323.2 mRNA downstream 23637 23479558 ~ 23541681 (-) False LOC110495851
XM_021571325.2 mRNA downstream 36265 23479558 ~ 23529053 (-) False LOC110495851
XM_036952289.1 mRNA downstream 86753 23459836 ~ 23478565 (-) True LOC110496920
XM_036952290.1 mRNA downstream 86856 23459836 ~ 23478462 (-) False LOC110496920
trnat-ugu-38 mRNA upstream 71520 23641871 ~ 23641943 (-) True trnat-ugu-38
XM_021571338.2 mRNA upstream 82086 23652437 ~ 23660203 (-) False wdsub1
XM_036952297.1 mRNA upstream 82086 23652437 ~ 23660989 (-) False wdsub1
XM_021571337.2 mRNA upstream 82086 23652437 ~ 23661730 (-) False wdsub1
XM_021571340.2 mRNA upstream 82086 23652437 ~ 23661731 (-) False wdsub1
TU1750685 other downstream 21825 23542606 ~ 23543493 (-) True LOC110495852
TU1750687 other downstream 24062 23481540 ~ 23541256 (-) True LOC110495851
TU1750411 other downstream 396727 23159558 ~ 23168591 (-) True LOC110495841
TU1749447 other downstream 679485 22872045 ~ 22885833 (-) True G1528018
TU1748552 other downstream 1302856 22262056 ~ 22262462 (-) True G1527230
TU1751209 other upstream 709387 24279738 ~ 24280446 (-) False LOC110497104
TU1751211 other upstream 713240 24283591 ~ 24283994 (-) True LOC110497104
TU1751283 other upstream 823024 24393375 ~ 24393684 (-) True G1529613
TU1752728 other upstream 1579717 25150068 ~ 25150994 (-) True G1530967
TU1752921 other upstream 1949070 25519421 ~ 25523180 (-) True G1531142

Expression Profile