RNA id: TU1750798



Basic Information


Item Value
RNA id TU1750798
length 228
lncRNA type antisense_over
GC content 0.60
exon number 1
gene id G1529206
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23591001 ~ 23591228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGCTGTTACAGTACCTGGGGACTTGATGCCCATATGTGAGGGCATTATGTAGGACTGGCGATGGACCAGGGGCGAGGAAGGCAGGGAGATGGACTCCCCCTTAGCCAGTTTCCCCCTCGGCCTGCCCCTTGAGGGCTGGGGGTGGTGGGCATGGCTAGGTTCCTGGTAGTGGGTCACCCAAGCACCAGCACCCCTTCGTTGGATACTGTGGCTGTGGTAATCAGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1750738 lncRNA downstream 4168 23501264 ~ 23586833 (-) True G1529156
TU1750780 lncRNA downstream 20650 23565318 ~ 23570351 (-) True G1529193
TU1750679 lncRNA downstream 185995 23404735 ~ 23405006 (-) True G1529099
TU1750669 lncRNA downstream 196518 23394173 ~ 23394483 (-) True G1529089
TU1750664 lncRNA downstream 202528 23388236 ~ 23388473 (-) True G1529084
TU1750814 lncRNA upstream 22377 23613605 ~ 23614006 (-) True G1529222
TU1750857 lncRNA upstream 71383 23662611 ~ 23662833 (-) True G1529250
TU1750859 lncRNA upstream 73604 23664832 ~ 23666137 (-) True G1529252
TU1750861 lncRNA upstream 75825 23667053 ~ 23667325 (-) True G1529254
TU1750919 lncRNA upstream 174707 23765935 ~ 23766465 (-) True G1529300
XM_021571326.2 mRNA downstream 47370 23542411 ~ 23543631 (-) False LOC110495852
XM_021571323.2 mRNA downstream 49320 23479558 ~ 23541681 (-) False LOC110495851
XM_021571325.2 mRNA downstream 61948 23479558 ~ 23529053 (-) False LOC110495851
XM_036952289.1 mRNA downstream 112436 23459836 ~ 23478565 (-) True LOC110496920
XM_036952290.1 mRNA downstream 112539 23459836 ~ 23478462 (-) False LOC110496920
trnat-ugu-38 mRNA upstream 50643 23641871 ~ 23641943 (-) True trnat-ugu-38
XM_021571338.2 mRNA upstream 61209 23652437 ~ 23660203 (-) False wdsub1
XM_036952297.1 mRNA upstream 61209 23652437 ~ 23660989 (-) False wdsub1
XM_021571337.2 mRNA upstream 61209 23652437 ~ 23661730 (-) False wdsub1
XM_021571340.2 mRNA upstream 61209 23652437 ~ 23661731 (-) False wdsub1
TU1750685 other downstream 47508 23542606 ~ 23543493 (-) True LOC110495852
TU1750687 other downstream 49745 23481540 ~ 23541256 (-) True LOC110495851
TU1750411 other downstream 422410 23159558 ~ 23168591 (-) True LOC110495841
TU1749447 other downstream 705168 22872045 ~ 22885833 (-) True G1528018
TU1748552 other downstream 1328539 22262056 ~ 22262462 (-) True G1527230
TU1751209 other upstream 688510 24279738 ~ 24280446 (-) False LOC110497104
TU1751211 other upstream 692363 24283591 ~ 24283994 (-) True LOC110497104
TU1751283 other upstream 802147 24393375 ~ 24393684 (-) True G1529613
TU1752728 other upstream 1558840 25150068 ~ 25150994 (-) True G1530967
TU1752921 other upstream 1928193 25519421 ~ 25523180 (-) True G1531142

Expression Profile