RNA id: TU1750859


Basic Information

Item Value
RNA id TU1750859
length 891
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G1529252
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23664832 ~ 23666137 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcagggctttgtgatggccactcttccaataccttgactttgttgtccttaagccattttgccacaactttggaagtatacttggggtcattgtccatttggaagacccatttgcgaccaagctttaacttcctgacatgtcttgagatgttgcttcaatatatccacataatcttcctcatgatgtcatctattttgtgaagtgcaccagtccctcctgcagcaaagcacccccacacttgatgctgccaccccgtgcttcacggtttgcatggtgttcttgggcttgcaagcctccctctttttcctccaaacataacgatggtcattatggccaaacagttctatttttgtttcatcagaccagaggacatttcttcaaaaagtacaatctttgtcaccatgtgcagttgcaaactgtagtctgccttttttatggcggttttggagcagtggcttcttccttgcttagcggcctttcaggttatgtcgatataggactcgttttactatggttatagatacttttgtacccgtttcctccagcatcttcacaaggtcctttgctgttgttctaggattgatttgcacttttcgcaccaaagtacgttcatctctaggtagacagaacgcatctccttcctgagtggcatgatggctgcgtggtcccatggtgtttatacttgcttatacttgtttatacttgtgtactattgtttgtacagatgaacgtggtaccttcaggcggttggaaattgctcccaaggatgaaccagacttgtggaggtctacaattttttcttggctgatttcttttgattttcccatgatgtcaagcaaagaggcactgagtttgaaggttggccttgaaatacttcACAGGTaaacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1750857 lncRNA downstream 1999 23662611 ~ 23662833 (-) True G1529250
TU1750814 lncRNA downstream 50826 23613605 ~ 23614006 (-) True G1529222
TU1750798 lncRNA downstream 73604 23591001 ~ 23591228 (-) True G1529206
TU1750738 lncRNA downstream 77999 23501264 ~ 23586833 (-) True G1529156
TU1750780 lncRNA downstream 94481 23565318 ~ 23570351 (-) True G1529193
TU1750861 lncRNA upstream 916 23667053 ~ 23667325 (-) True G1529254
TU1750919 lncRNA upstream 99798 23765935 ~ 23766465 (-) True G1529300
TU1750921 lncRNA upstream 102909 23769046 ~ 23769345 (-) True G1529302
TU1750937 lncRNA upstream 155935 23822072 ~ 23823449 (-) True LOC110497101
TU1750964 lncRNA upstream 196778 23862915 ~ 23863506 (-) True G1529342
XM_021571339.2 mRNA downstream 3100 23652437 ~ 23661732 (-) True wdsub1
XM_021571340.2 mRNA downstream 3101 23652437 ~ 23661731 (-) False wdsub1
XM_021571337.2 mRNA downstream 3102 23652437 ~ 23661730 (-) False wdsub1
XM_036952297.1 mRNA downstream 3843 23652437 ~ 23660989 (-) False wdsub1
XM_021571338.2 mRNA downstream 4629 23652437 ~ 23660203 (-) False wdsub1
XM_036952299.1 mRNA upstream 3017 23669154 ~ 23750026 (-) False LOC110495859
XM_036952298.1 mRNA upstream 3017 23669154 ~ 23750347 (-) False LOC110495859
XM_036952300.1 mRNA upstream 3017 23669154 ~ 23750347 (-) False LOC110495859
XM_036952301.1 mRNA upstream 3017 23669154 ~ 23750347 (-) False LOC110495859
XM_036952302.1 mRNA upstream 3017 23669154 ~ 23750347 (-) False LOC110495859
TU1750685 other downstream 121339 23542606 ~ 23543493 (-) True LOC110495852
TU1750687 other downstream 123576 23481540 ~ 23541256 (-) True LOC110495851
TU1750411 other downstream 496241 23159558 ~ 23168591 (-) True LOC110495841
TU1749447 other downstream 778999 22872045 ~ 22885833 (-) True G1528018
TU1748552 other downstream 1402370 22262056 ~ 22262462 (-) True G1527230
TU1751209 other upstream 613601 24279738 ~ 24280446 (-) False LOC110497104
TU1751211 other upstream 617454 24283591 ~ 24283994 (-) True LOC110497104
TU1751283 other upstream 727238 24393375 ~ 24393684 (-) True G1529613
TU1752728 other upstream 1483931 25150068 ~ 25150994 (-) True G1530967
TU1752921 other upstream 1853284 25519421 ~ 25523180 (-) True G1531142

Expression Profile