RNA id: TU1750984


Basic Information

Item Value
RNA id TU1750984
length 275
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1529362
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23899327 ~ 23899601 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccattaaggtatctttacttttactcaagtatgacaattgggtactttttccaccactgtatgcCACTTACTGTACATCCGAAAAATGTGTCAAAGTGATTGAAAGAAACAGAAACTGGATGGCCTATAACACAGTATTCTGCACCACAATGTGGGTGTgtggtttagtttagtttagtttcatttattaggatccccattagctactgcacacgcagcagctacacttcctggggtccacataaaaccTACAAATACGTATAAGAGTTATACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1750983 lncRNA downstream 1508 23897600 ~ 23897819 (-) True G1529361
TU1750964 lncRNA downstream 35821 23862915 ~ 23863506 (-) True G1529342
TU1750937 lncRNA downstream 75878 23822072 ~ 23823449 (-) True LOC110497101
TU1750921 lncRNA downstream 129982 23769046 ~ 23769345 (-) True G1529302
TU1750919 lncRNA downstream 132862 23765935 ~ 23766465 (-) True G1529300
TU1750993 lncRNA upstream 10327 23909928 ~ 23910145 (-) True G1529370
TU1750996 lncRNA upstream 11729 23911330 ~ 23911696 (-) True G1529372
TU1750936 lncRNA upstream 12251 23911852 ~ 23912788 (-) True G1529317
TU1750942 lncRNA upstream 13232 23912833 ~ 23915772 (-) True G1529322
TU1750941 lncRNA upstream 16244 23915845 ~ 23917766 (-) True G1529321
XM_036952321.1 mRNA downstream 8905 23873669 ~ 23890422 (-) True LOC110495863
XM_036952320.1 mRNA downstream 8906 23873669 ~ 23890421 (-) False LOC110495863
XM_036952323.1 mRNA downstream 8906 23873669 ~ 23890421 (-) False LOC110495863
XM_036952328.1 mRNA downstream 8906 23873669 ~ 23890421 (-) False LOC110495863
XM_036952326.1 mRNA downstream 8908 23873669 ~ 23890419 (-) False LOC110495863
XM_021571363.2 mRNA upstream 19127 23918728 ~ 23948039 (-) False LOC110495867
XM_021571361.2 mRNA upstream 19127 23918728 ~ 23948050 (-) False LOC110495867
XM_021571364.2 mRNA upstream 19127 23918728 ~ 23948071 (-) True LOC110495867
XM_021571365.2 mRNA upstream 49123 23948724 ~ 23970857 (-) False LOC110495869
XR_002469483.2 mRNA upstream 49123 23948724 ~ 23971314 (-) False LOC110495869
TU1750685 other downstream 355834 23542606 ~ 23543493 (-) True LOC110495852
TU1750687 other downstream 358071 23481540 ~ 23541256 (-) True LOC110495851
TU1750411 other downstream 730736 23159558 ~ 23168591 (-) True LOC110495841
TU1749447 other downstream 1013494 22872045 ~ 22885833 (-) True G1528018
TU1748552 other downstream 1636865 22262056 ~ 22262462 (-) True G1527230
TU1751209 other upstream 380137 24279738 ~ 24280446 (-) False LOC110497104
TU1751211 other upstream 383990 24283591 ~ 24283994 (-) True LOC110497104
TU1751283 other upstream 493774 24393375 ~ 24393684 (-) True G1529613
TU1752728 other upstream 1250467 25150068 ~ 25150994 (-) True G1530967
TU1752921 other upstream 1619820 25519421 ~ 25523180 (-) True G1531142

Expression Profile