RNA id: TCONS_00049327


Basic Information

Item Value
RNA id TCONS_00049327
length 1026
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_024435
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 4930365 ~ 4931600 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttttttGAAAGTTATTAAAATACACGTTTAATTAATAGAATAAAATCCagtgaaaaagtaaaataaacaaagatacaaataacagaaacaaaatcCTTTACTTTATACTCAGTTGAGAATAAAGAGCCCAAGACATTCAGTATGTAGAAGTCAGAAAGTGCGCAGCTCGTATATTTCAGCTTTATATACTGCTCATGCATAGATAAAGATCCACTACTGGGACCGTGCTCAGAAACAGTGTTCAGAAACAGGTTTGTAGAAACAGAGCACAGGTCATTCATAGACACAGGTGTATAACCTAATTAAATCATATGTTCAGGAGCATGCTTAGCAATTTTCCTAATAATAAAGGACGACGCCAAATGTGCTGGTCTCGGCTTTTCCTGTAGTCGTCAGTTTAGTGGAATAAAAACAACATGAGGAAACACAAAGATGCTGAATCTGGATAACTGAGCTACTTTTATTCTTATACTTCAATTTGTTGGCCTGGAGTTGTGTATTAATCATTATTTTCCATGGTATAAGCAATTGTTAGATAgtcattatctttaaataatcGTATAAAAGAGGGCTTAACGGTCAGTATCATGCTTGGTGTGAACGGGTCTGTTATTAGGTTTGTTATTGTAGCATCAGTTTCATGAGCTTATCTGAGGCCGAAGCTCTTTTTTATTCCTCAAAATGATTGTCTTTTTGTAAAATAAGTCATTAATTCTAATAAACTGTCTTTTAATATTCAATAGATGAACCGAGAAATGAAGATACATAGCTGTTGTGTAGAAACAGGTTGGAGAGTTTTCATCTAATGATGGTGGAGGTCAGGTTCATTTAGGATTTGGTGTTGATTTGAGCAAATAAAAATCACAGATTAAATGTTTCTGAAGCAAGTAAGAGATTAACTATAAATGTAATGGCGTCTGTTCTTTGGTCTTCTGATATCTTCAGATCCCCAGAGAGTCTTTGGTGACCTGACATCCGAGCAGGAcattacccacacacacacactgagacagATCgcccactg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049326 lncRNA downstream 351901 4570228 ~ 4578464 (-) True XLOC_024432
TCONS_00049325 lncRNA downstream 351923 4570228 ~ 4578442 (-) False XLOC_024432
TCONS_00049324 lncRNA downstream 735022 4194792 ~ 4195343 (-) True XLOC_024427
TCONS_00049323 lncRNA downstream 758608 4168932 ~ 4171757 (-) True XLOC_024425
TCONS_00049322 lncRNA downstream 1045935 3880722 ~ 3884430 (-) True XLOC_024421
TCONS_00049328 lncRNA upstream 364832 5296432 ~ 5300492 (-) True XLOC_024437
TCONS_00049076 lncRNA upstream 534893 5466493 ~ 5466809 (-) True XLOC_024439
TCONS_00049329 lncRNA upstream 844431 5776031 ~ 5777257 (-) True XLOC_024441
TCONS_00048303 lncRNA upstream 952142 5883742 ~ 5903572 (-) False XLOC_024443
TCONS_00049330 lncRNA upstream 970625 5902225 ~ 5903422 (-) True XLOC_024443
TCONS_00048294 mRNA downstream 197144 4707189 ~ 4733221 (-) False XLOC_024433
TCONS_00048293 mRNA downstream 212903 4707173 ~ 4717462 (-) False XLOC_024433
TCONS_00048295 mRNA downstream 216904 4708471 ~ 4713461 (-) True XLOC_024433
TCONS_00048291 mRNA downstream 400280 4507288 ~ 4530085 (-) False XLOC_024431
TCONS_00048292 mRNA downstream 405284 4507306 ~ 4525081 (-) True XLOC_024431
TCONS_00048297 mRNA upstream 166462 5098062 ~ 5119162 (-) False XLOC_024436
TCONS_00048298 mRNA upstream 186988 5118588 ~ 5189989 (-) True XLOC_024436
TCONS_00048300 mRNA upstream 770494 5702094 ~ 5740334 (-) False XLOC_024440
TCONS_00048301 mRNA upstream 770500 5702100 ~ 5740373 (-) True XLOC_024440
TCONS_00048302 mRNA upstream 858936 5790536 ~ 5815834 (-) True XLOC_024442
TCONS_00048296 other downstream 25933 4890767 ~ 4904432 (-) True XLOC_024434
TCONS_00048288 other downstream 604634 4325616 ~ 4325731 (-) True XLOC_024429
TCONS_00048237 other downstream 1895697 3016170 ~ 3034668 (-) False XLOC_024397
TCONS_00048212 other downstream 3300616 1629655 ~ 1629749 (-) True XLOC_024382
TCONS_00048188 other downstream 4439580 488821 ~ 490785 (-) True XLOC_024368
TCONS_00048299 other upstream 409362 5340962 ~ 5341102 (-) True XLOC_024438
TCONS_00048304 other upstream 996571 5928171 ~ 5928286 (-) True XLOC_024444
TCONS_00048310 other upstream 1139995 6071595 ~ 6079431 (-) True XLOC_024448
TCONS_00048311 other upstream 1142332 6073932 ~ 6074050 (-) True XLOC_024449
TCONS_00048315 other upstream 1345118 6276718 ~ 6276855 (-) True XLOC_024453

Expression Profile

//