RNA id: TU1750350


Basic Information

Item Value
RNA id TU1750350
length 371
lncRNA type antisense_over
GC content 0.36
exon number 1
gene id G1528792
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24281361 ~ 24281731 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCAATTAAATAGAAAAAACCCAAAAAAAACAATATTGTATTTCATAAAAATGTACAAAAGATATATACATATCCAACACAACAGAGTTGCATGGCagtatacaaaaaaaaaacgtagATTCCTAATACACTATGATATCTTAGTATCCTCGTCATCATCAAGGGCGGTACTGGAGAAAAAGTCATTTGACACCGAAAAGGAGGATTCTCTTTCCCTTTTAGATTTTTCCTAATTCATCACCAAGAGTTAATAGCAATGTTGTCACCCCCAGAATATGTATCATATCAAGCGTTTGCATATTCTTCAGAAGTGGTTGCTTAATTCCAGCCACAACTTGTCCCCGACACTGAGACGTCACTGTTCATCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1750349 lncRNA upstream 1286 24279854 ~ 24280075 (+) True G1528791
TU1750347 lncRNA upstream 2246 24278902 ~ 24279115 (+) True G1528789
TU1750337 lncRNA upstream 15522 24265522 ~ 24265839 (+) True G1528779
TU1750324 lncRNA upstream 150682 24129929 ~ 24130679 (+) True G1528766
TU1750314 lncRNA upstream 173586 24106210 ~ 24107775 (+) True G1528760
TU1750352 lncRNA downstream 4909 24286640 ~ 24286937 (+) True G1528794
TU1750353 lncRNA downstream 7416 24289147 ~ 24289487 (+) True G1528795
TU1750356 lncRNA downstream 10889 24292620 ~ 24292846 (+) True G1528798
TU1750357 lncRNA downstream 11444 24293175 ~ 24293439 (+) True G1528799
TU1750360 lncRNA downstream 14381 24296112 ~ 24296424 (+) True G1528802
XM_036952395.1 mRNA upstream 18255 24222829 ~ 24263106 (+) False LOC110495884
XM_036951425.1 mRNA downstream 183807 24465538 ~ 24472111 (+) False LOC118941069
XM_036952400.1 mRNA downstream 190368 24472099 ~ 24477037 (+) False LOC110495888
XM_021571400.2 mRNA downstream 190446 24472177 ~ 24477037 (+) True LOC110495888
XM_036952401.1 mRNA downstream 238966 24520697 ~ 24525649 (+) False LOC110495887
XM_021571401.2 mRNA downstream 274506 24556237 ~ 24574771 (+) True LOC110495890
TU1749630 other upstream 1120070 23158833 ~ 23161291 (+) True G1528194
TU1748777 other upstream 1669909 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other upstream 1669909 22599497 ~ 22611452 (+) True LOC110497098
TU1746485 other upstream 3523949 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 3797648 20473360 ~ 20483713 (+) True G1524181
TU1751373 other downstream 239004 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 723030 25004761 ~ 25005609 (+) True G1530367
TU1752290 other downstream 867252 25148983 ~ 25149468 (+) False LOC110495895
TU1752288 other downstream 873002 25154733 ~ 25155895 (+) True LOC110495895
TU1752534 other downstream 1284740 25566471 ~ 25571346 (+) True G1530785

Expression Profile