RNA id: TU1751212


Basic Information

Item Value
RNA id TU1751212
length 330
lncRNA type intronic
GC content 0.46
exon number 1
gene id G1529542
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24286977 ~ 24287306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactccctagaaaggccaaaacctaggaagaaacctagagaggaaccaggttatgtggggtggccagtcctcttctggctgtgccgggtggagattataacaaaacatggtcaagatgttcaaatgttcataaatgaccagcatggtcaaataataataaggcagaatagttgaaactggagcagcagcacagtcaggtggactggggacagcaaggagtatCCCATCAGAGTATAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1751210 lncRNA downstream 5028 24281523 ~ 24281949 (-) False LOC110497104
TU1751200 lncRNA downstream 19435 24267322 ~ 24267542 (-) True G1529530
TU1751154 lncRNA downstream 23882 24217812 ~ 24263095 (-) True G1529492
TU1751148 lncRNA downstream 65888 24218863 ~ 24221089 (-) True G1529491
TU1751159 lncRNA downstream 69753 24215801 ~ 24217224 (-) True G1529494
TU1751214 lncRNA upstream 4093 24291399 ~ 24291645 (-) True G1529544
TU1751215 lncRNA upstream 4706 24292012 ~ 24292241 (-) True G1529545
TU1751219 lncRNA upstream 8774 24296080 ~ 24296312 (-) True G1529549
TU1751231 lncRNA upstream 31525 24318831 ~ 24319223 (-) True G1529561
TU1751234 lncRNA upstream 37418 24324724 ~ 24324959 (-) True G1529564
XR_005037574.1 mRNA downstream 60578 24226270 ~ 24226399 (-) True LOC118941245
XM_021571394.2 mRNA downstream 77522 24207344 ~ 24209455 (-) True LOC110495883
XM_021571393.2 mRNA downstream 110994 24167580 ~ 24175983 (-) True LOC110495882
XM_036952332.1 mRNA downstream 214618 24043236 ~ 24072359 (-) False LOC110495873
XM_021571369.2 mRNA downstream 284052 23999571 ~ 24002925 (-) True LOC110495872
XM_021571398.2 mRNA upstream 165924 24453230 ~ 24465553 (-) False LOC110495886
XM_036952398.1 mRNA upstream 191009 24478315 ~ 24519902 (-) False LOC110495885
XM_036952399.1 mRNA upstream 191009 24478315 ~ 24519903 (-) True LOC110495885
XM_021571403.2 mRNA upstream 333371 24620677 ~ 24629312 (-) False LOC110495891
XM_036952402.1 mRNA upstream 339107 24626413 ~ 24629309 (-) True LOC110495891
TU1751211 other downstream 2983 24283591 ~ 24283994 (-) True LOC110497104
TU1751209 other downstream 6531 24279738 ~ 24280446 (-) False LOC110497104
TU1750685 other downstream 743484 23542606 ~ 23543493 (-) True LOC110495852
TU1750687 other downstream 745721 23481540 ~ 23541256 (-) True LOC110495851
TU1750411 other downstream 1118386 23159558 ~ 23168591 (-) True LOC110495841
TU1751283 other upstream 106069 24393375 ~ 24393684 (-) True G1529613
TU1752728 other upstream 862762 25150068 ~ 25150994 (-) True G1530967
TU1752921 other upstream 1232115 25519421 ~ 25523180 (-) True G1531142
TU1752958 other upstream 1286132 25573438 ~ 25573671 (-) True LOC110495915
TU1753025 other upstream 1409233 25696539 ~ 25708874 (-) True G1531236

Expression Profile