RNA id: TU1751329



Basic Information


Item Value
RNA id TU1751329
length 466
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G1529657
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24464075 ~ 24464540 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TACATCACCTTGGTCTAATGTTTAGTCCAAACCTTAGGCACCATACCCAGCTTGGTCTTTGCGTAAAAGTGGTTTTATTTGTTCATTTTTTTCCTAATACAATAGAGTAAACGGTAGCTTGCCTGTAATATACAATAATTACACACCTGTCTCTGCGAAACTGATTATCTCCGAGCTTTCCTCCAGCACGTCATTGGCATTGCTGGTCGCGTGTCCATCCAGATTCGGGATTTCTACTCTCCCATCCTCGCGCACTTTACCCGCGTGTAGTTTCCGAAGCGCAGTCACCATCGCCGCCTTCGGGATAGGATGGGTGATGTTGGGTCTTACCCTCATCTGTAACCTGCTCAAGATATGCCTTTTCACCGTCTCCAGAAAGTCAATGTCCACCTGTCCCGATTCTTCGGGCTGACCGATGCCACACGAAGAGCAAGCTTCCTGAGCTACGGTTTGCGTCTCCATTCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1751282 lncRNA upstream 71429 24392403 ~ 24392646 (+) True G1529612
TU1751268 lncRNA upstream 83407 24380449 ~ 24380668 (+) True G1529598
TU1751266 lncRNA upstream 86132 24377719 ~ 24377943 (+) True G1529596
TU1751263 lncRNA upstream 86740 24377116 ~ 24377335 (+) True G1529593
TU1750393 lncRNA upstream 95573 24368294 ~ 24368502 (+) True G1528835
TU1751331 lncRNA downstream 4463 24469003 ~ 24469218 (+) True LOC118941069
TU1751374 lncRNA downstream 58463 24523003 ~ 24523231 (+) True LOC110495887
TU1751384 lncRNA downstream 74389 24538929 ~ 24539269 (+) True G1529700
TU1751375 lncRNA downstream 76323 24540863 ~ 24541985 (+) False G1529693
TU1751376 lncRNA downstream 76323 24540863 ~ 24541985 (+) False G1529693
XM_036952395.1 mRNA upstream 200969 24222829 ~ 24263106 (+) False LOC110495884
XM_036951425.1 mRNA downstream 998 24465538 ~ 24472111 (+) False LOC118941069
XM_036952400.1 mRNA downstream 7559 24472099 ~ 24477037 (+) False LOC110495888
XM_021571400.2 mRNA downstream 7637 24472177 ~ 24477037 (+) True LOC110495888
XM_036952401.1 mRNA downstream 56157 24520697 ~ 24525649 (+) False LOC110495887
XM_021571401.2 mRNA downstream 91697 24556237 ~ 24574771 (+) True LOC110495890
TU1749630 other upstream 1302784 23158833 ~ 23161291 (+) True G1528194
TU1748777 other upstream 1852623 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other upstream 1852623 22599497 ~ 22611452 (+) True LOC110497098
TU1746485 other upstream 3706663 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 3980362 20473360 ~ 20483713 (+) True G1524181
TU1751373 other downstream 56195 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 540221 25004761 ~ 25005609 (+) True G1530367
TU1752290 other downstream 684443 25148983 ~ 25149468 (+) False LOC110495895
TU1752288 other downstream 690193 25154733 ~ 25155895 (+) True LOC110495895
TU1752534 other downstream 1101931 25566471 ~ 25571346 (+) True G1530785

Expression Profile