RNA id: TU1751746



Basic Information


Item Value
RNA id TU1751746
length 256
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1530031
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24761808 ~ 24762063 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccaggcctaatcacccaatatcagtgcctgacctcactaatgctcttgtggctgaatggaagcaagtccccacagcaatgttccaacatctagtggaaagtcttcccagaggagtggaggctgttatagcaggataggggggactaactccatattaatgcccatggttttggaatgagaatGAGATGAGCAGGTGCCCCATAGCCTTTGGTAATGTGTACGAAGACATACCCACTCTAGACAAACCTTGTAACTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1751732 lncRNA upstream 5318 24756212 ~ 24756490 (+) True G1530017
TU1751728 lncRNA upstream 9512 24752097 ~ 24752296 (+) True G1530013
TU1751727 lncRNA upstream 9863 24751656 ~ 24751945 (+) True G1530012
TU1751673 lncRNA upstream 55962 24705446 ~ 24705846 (+) True G1529960
TU1751376 lncRNA upstream 219823 24540863 ~ 24541985 (+) False G1529693
TU1751871 lncRNA downstream 165092 24927155 ~ 24999214 (+) True G1530153
TU1751897 lncRNA downstream 193787 24955850 ~ 24956259 (+) True G1530175
TU1752085 lncRNA downstream 238926 25000989 ~ 25001207 (+) True G1530360
TU1752099 lncRNA downstream 246885 25008948 ~ 25009211 (+) True G1530374
TU1752100 lncRNA downstream 247165 25009228 ~ 25009462 (+) True G1530375
LOC110495892 mRNA upstream 135441 24614243 ~ 24626367 (+) True LOC110495892
XM_021571401.2 mRNA upstream 187037 24556237 ~ 24574771 (+) True LOC110495890
XM_036952401.1 mRNA upstream 236159 24520697 ~ 24525649 (+) False LOC110495887
XM_036952400.1 mRNA upstream 284771 24472099 ~ 24477037 (+) False LOC110495888
XM_021571408.2 mRNA downstream 313637 25075700 ~ 25097350 (+) False LOC110495894
XR_002469486.2 mRNA downstream 314080 25076143 ~ 25095301 (+) False LOC110495894
XM_021571407.2 mRNA downstream 314084 25076147 ~ 25097350 (+) False LOC110495894
XM_036952405.1 mRNA downstream 371147 25133210 ~ 25153706 (+) False LOC110495895
XM_021571410.2 mRNA downstream 371207 25133270 ~ 25157338 (+) False LOC110495895
TU1751373 other upstream 238862 24520735 ~ 24522946 (+) False LOC110495887
TU1749630 other upstream 1600517 23158833 ~ 23161291 (+) True G1528194
TU1748777 other upstream 2150356 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other upstream 2150356 22599497 ~ 22611452 (+) True LOC110497098
TU1746485 other upstream 4004396 20756691 ~ 20757412 (+) True G1525320
TU1752092 other downstream 242698 25004761 ~ 25005609 (+) True G1530367
TU1752290 other downstream 386920 25148983 ~ 25149468 (+) False LOC110495895
TU1752288 other downstream 392670 25154733 ~ 25155895 (+) True LOC110495895
TU1752534 other downstream 804408 25566471 ~ 25571346 (+) True G1530785
TU1752680 other downstream 1076443 25838506 ~ 25839735 (+) False G1530923

Expression Profile