RNA id: TU1752085


Basic Information

Item Value
RNA id TU1752085
length 219
lncRNA type intronic
GC content 0.54
exon number 1
gene id G1530360
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25000989 ~ 25001207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatcagtctgtccctgatgtttttcctggagagaagtagcttctttgctgcccttcttgacaccaggccatcctccaaaagtcttcgcctcactgtgcgtgcagatgcactcacacctgcctgctgccattcctgagcaagctctgtactggtggtgccccgatcccgcagctgaatcaactttaggagacggtcctggcgcttgctggactttcttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1751871 lncRNA upstream 1775 24927155 ~ 24999214 (+) True G1530153
TU1751897 lncRNA upstream 44730 24955850 ~ 24956259 (+) True G1530175
TU1751746 lncRNA upstream 238926 24761808 ~ 24762063 (+) True G1530031
TU1751732 lncRNA upstream 244499 24756212 ~ 24756490 (+) True G1530017
TU1751728 lncRNA upstream 248693 24752097 ~ 24752296 (+) True G1530013
TU1752099 lncRNA downstream 7741 25008948 ~ 25009211 (+) True G1530374
TU1752100 lncRNA downstream 8021 25009228 ~ 25009462 (+) True G1530375
TU1752118 lncRNA downstream 19652 25020859 ~ 25021156 (+) True G1530392
TU1752165 lncRNA downstream 72519 25073726 ~ 25073939 (+) True G1530439
TU1752112 lncRNA downstream 93219 25094426 ~ 25097226 (+) True LOC110495894
LOC110495892 mRNA upstream 374622 24614243 ~ 24626367 (+) True LOC110495892
XM_021571401.2 mRNA upstream 426218 24556237 ~ 24574771 (+) True LOC110495890
XM_036952401.1 mRNA upstream 475340 24520697 ~ 24525649 (+) False LOC110495887
XM_036952400.1 mRNA upstream 523952 24472099 ~ 24477037 (+) False LOC110495888
XM_021571408.2 mRNA downstream 74493 25075700 ~ 25097350 (+) False LOC110495894
XR_002469486.2 mRNA downstream 74936 25076143 ~ 25095301 (+) False LOC110495894
XM_021571407.2 mRNA downstream 74940 25076147 ~ 25097350 (+) False LOC110495894
XM_036952405.1 mRNA downstream 132003 25133210 ~ 25153706 (+) False LOC110495895
XM_021571410.2 mRNA downstream 132063 25133270 ~ 25157338 (+) False LOC110495895
TU1751373 other upstream 478043 24520735 ~ 24522946 (+) False LOC110495887
TU1749630 other upstream 1839698 23158833 ~ 23161291 (+) True G1528194
TU1748777 other upstream 2389537 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other upstream 2389537 22599497 ~ 22611452 (+) True LOC110497098
TU1746485 other upstream 4243577 20756691 ~ 20757412 (+) True G1525320
TU1752092 other downstream 3554 25004761 ~ 25005609 (+) True G1530367
TU1752290 other downstream 147776 25148983 ~ 25149468 (+) False LOC110495895
TU1752288 other downstream 153526 25154733 ~ 25155895 (+) True LOC110495895
TU1752534 other downstream 565264 25566471 ~ 25571346 (+) True G1530785
TU1752680 other downstream 837299 25838506 ~ 25839735 (+) False G1530923

Expression Profile