RNA id: TU1752092



Basic Information


Item Value
RNA id TU1752092
length 849
RNA type TUCP
GC content 0.40
exon number 1
gene id G1530367
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25004761 ~ 25005609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AACACATCCCAAtcgtgaagtacgggggtggcagcatcatggtgtgggggtgctttgctgcaggagagactggtgcacttcacaaaatagatggcattatgagggagggaaatgatgtggatatattgaagcaacatctcaagacatcagtcaggaagttaaagcttggtcgcaaatgggtcttccgaatggacaatgatcccaagaatacttccaaagttgtggcaaaatggctgaaggacaacaaagtcaaggtattgaggtggccatcacaaagccctgacctcaaccctatagaacatttgtgggcagaactgaaaaagcgtgtgcgagcaaggaggcctacaaacctgactcagttacaccagttttgtcagtaggaatgggccaacattcacccaacttattgtgggaagcttgtggaaggctacccaaaacgtttgacccaagttaaacaatttaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgacccactggaaatgtgctGAAATAacttaaagctgaaataaatcattctctctactattattctgacatttcacattcttaaaataaagtggtgatcctaactgtcagggaatctttactaggattaaatgacaggaaatgtgaaaaactgagtttaaatgtatttggctgaggtgtatgtaaacttccaacttcgactgtatttatttattttaatcccaaGCCTcttgtccccgcaggaggccttttgccttttggtaggccgtcattgtaatttagaatttgttcttaactgacttgccaagttaaataaaggtcacattttaaaaaaaatgtataaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1752085 lncRNA upstream 3554 25000989 ~ 25001207 (+) True G1530360
TU1751871 lncRNA upstream 5547 24927155 ~ 24999214 (+) True G1530153
TU1751897 lncRNA upstream 48502 24955850 ~ 24956259 (+) True G1530175
TU1751746 lncRNA upstream 242698 24761808 ~ 24762063 (+) True G1530031
TU1751732 lncRNA upstream 248271 24756212 ~ 24756490 (+) True G1530017
TU1752099 lncRNA downstream 3339 25008948 ~ 25009211 (+) True G1530374
TU1752100 lncRNA downstream 3619 25009228 ~ 25009462 (+) True G1530375
TU1752118 lncRNA downstream 15250 25020859 ~ 25021156 (+) True G1530392
TU1752165 lncRNA downstream 68117 25073726 ~ 25073939 (+) True G1530439
TU1752112 lncRNA downstream 88817 25094426 ~ 25097226 (+) True LOC110495894
LOC110495892 mRNA upstream 378394 24614243 ~ 24626367 (+) True LOC110495892
XM_021571401.2 mRNA upstream 429990 24556237 ~ 24574771 (+) True LOC110495890
XM_036952401.1 mRNA upstream 479112 24520697 ~ 24525649 (+) False LOC110495887
XM_036952400.1 mRNA upstream 527724 24472099 ~ 24477037 (+) False LOC110495888
XM_021571400.2 mRNA upstream 527724 24472177 ~ 24477037 (+) True LOC110495888
XM_021571408.2 mRNA downstream 70091 25075700 ~ 25097350 (+) False LOC110495894
XR_002469486.2 mRNA downstream 70534 25076143 ~ 25095301 (+) False LOC110495894
XM_021571407.2 mRNA downstream 70538 25076147 ~ 25097350 (+) False LOC110495894
XM_036952405.1 mRNA downstream 127601 25133210 ~ 25153706 (+) False LOC110495895
XM_021571410.2 mRNA downstream 127661 25133270 ~ 25157338 (+) False LOC110495895
TU1751373 other upstream 481815 24520735 ~ 24522946 (+) False LOC110495887
TU1749630 other upstream 1843470 23158833 ~ 23161291 (+) True G1528194
TU1748777 other upstream 2393309 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other upstream 2393309 22599497 ~ 22611452 (+) True LOC110497098
TU1746485 other upstream 4247349 20756691 ~ 20757412 (+) True G1525320
TU1752290 other downstream 143374 25148983 ~ 25149468 (+) False LOC110495895
TU1752288 other downstream 149124 25154733 ~ 25155895 (+) True LOC110495895
TU1752534 other downstream 560862 25566471 ~ 25571346 (+) True G1530785
TU1752680 other downstream 832897 25838506 ~ 25839735 (+) False G1530923
TU1752681 other downstream 832897 25838506 ~ 25839735 (+) False G1530923

Expression Profile