RNA id: TU1752305



Basic Information


Item Value
RNA id TU1752305
length 201
lncRNA type intronic
GC content 0.47
exon number 1
gene id G1530575
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25142918 ~ 25143118 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


catttaggcaggttaccttcgcttctttgggcatagggactatggtggtctgcttgaaacatgtaggtattacagactcggtcaaggaaaggttgaaaatgtcagtgaagacacttgacagttgagccgcgcatgctttgagtacacgtcctggtaatccatctggcccagcggctttgtgaatgttgacctgttttaaag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1752303 lncRNA upstream 3195 25139391 ~ 25139723 (+) True G1530573
TU1752112 lncRNA upstream 45692 25094426 ~ 25097226 (+) True LOC110495894
TU1752165 lncRNA upstream 68979 25073726 ~ 25073939 (+) True G1530439
TU1752118 lncRNA upstream 121762 25020859 ~ 25021156 (+) True G1530392
TU1752100 lncRNA upstream 133456 25009228 ~ 25009462 (+) True G1530375
TU1752289 lncRNA downstream 4014 25147132 ~ 25147565 (+) False LOC110495895
TU1752308 lncRNA downstream 15955 25159073 ~ 25159277 (+) True G1530578
TU1752312 lncRNA downstream 22009 25165127 ~ 25165416 (+) True G1530582
TU1752317 lncRNA downstream 30235 25173353 ~ 25173564 (+) True G1530587
TU1752320 lncRNA downstream 34322 25177440 ~ 25177873 (+) True G1530590
XM_021571408.2 mRNA upstream 45568 25075700 ~ 25097350 (+) False LOC110495894
XM_021571407.2 mRNA upstream 45568 25076147 ~ 25097350 (+) False LOC110495894
XR_002469486.2 mRNA upstream 47617 25076143 ~ 25095301 (+) False LOC110495894
LOC110495892 mRNA upstream 516551 24614243 ~ 24626367 (+) True LOC110495892
XM_021571401.2 mRNA upstream 568147 24556237 ~ 24574771 (+) True LOC110495890
XM_036952408.1 mRNA downstream 54126 25197244 ~ 25229821 (+) False dhrsx
XM_036952407.1 mRNA downstream 61428 25204546 ~ 25229821 (+) True dhrsx
XM_021571416.2 mRNA downstream 61465 25204583 ~ 25208443 (+) True LOC110495899
XM_021571420.2 mRNA downstream 120877 25263995 ~ 25272511 (+) False LOC110495902
XM_036952410.1 mRNA downstream 121186 25264304 ~ 25272511 (+) False LOC110495902
TU1752092 other upstream 137309 25004761 ~ 25005609 (+) True G1530367
TU1751373 other upstream 619972 24520735 ~ 24522946 (+) False LOC110495887
TU1749630 other upstream 1981627 23158833 ~ 23161291 (+) True G1528194
TU1748777 other upstream 2531466 22599413 ~ 22611452 (+) False LOC110497098
TU1752290 other downstream 5865 25148983 ~ 25149468 (+) False LOC110495895
TU1752288 other downstream 11615 25154733 ~ 25155895 (+) True LOC110495895
TU1752534 other downstream 423353 25566471 ~ 25571346 (+) True G1530785
TU1752680 other downstream 695388 25838506 ~ 25839735 (+) False G1530923
TU1752681 other downstream 695388 25838506 ~ 25839735 (+) False G1530923

Expression Profile