RNA id: TU1752317


Basic Information

Item Value
RNA id TU1752317
length 212
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1530587
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25173353 ~ 25173564 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgaactgacttgttggaaaggtggcacattgaaagtcactgagcttttcagtaaggccattctactgccaacgttTGTCAATGCAGATTGCttggttgtgtgctcgatttcatacacctgtcagcaatgggtgtggctgaaatagccaaaaccactcatttgaaggggtgtccacatacttttgtacatatagtgtataattttgggaggtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1752312 lncRNA upstream 7937 25165127 ~ 25165416 (+) True G1530582
TU1752308 lncRNA upstream 14076 25159073 ~ 25159277 (+) True G1530578
TU1752289 lncRNA upstream 25788 25147132 ~ 25147565 (+) False LOC110495895
TU1752305 lncRNA upstream 30235 25142918 ~ 25143118 (+) True G1530575
TU1752303 lncRNA upstream 33630 25139391 ~ 25139723 (+) True G1530573
TU1752320 lncRNA downstream 3876 25177440 ~ 25177873 (+) True G1530590
TU1752321 lncRNA downstream 5118 25178682 ~ 25179044 (+) True G1530591
TU1752359 lncRNA downstream 81328 25254892 ~ 25255132 (+) True G1530626
TU1752360 lncRNA downstream 81673 25255237 ~ 25255779 (+) True G1530627
TU1752361 lncRNA downstream 82803 25256367 ~ 25256594 (+) True G1530628
XM_021571410.2 mRNA upstream 16015 25133270 ~ 25157338 (+) False LOC110495895
XM_036952405.1 mRNA upstream 19647 25133210 ~ 25153706 (+) False LOC110495895
XM_021571408.2 mRNA upstream 76003 25075700 ~ 25097350 (+) False LOC110495894
XM_036952408.1 mRNA downstream 23680 25197244 ~ 25229821 (+) False dhrsx
XM_036952407.1 mRNA downstream 30982 25204546 ~ 25229821 (+) True dhrsx
XM_021571416.2 mRNA downstream 31019 25204583 ~ 25208443 (+) True LOC110495899
XM_021571420.2 mRNA downstream 90431 25263995 ~ 25272511 (+) False LOC110495902
XM_036952410.1 mRNA downstream 90740 25264304 ~ 25272511 (+) False LOC110495902
TU1752288 other upstream 17458 25154733 ~ 25155895 (+) True LOC110495895
TU1752290 other upstream 23885 25148983 ~ 25149468 (+) False LOC110495895
TU1752092 other upstream 167744 25004761 ~ 25005609 (+) True G1530367
TU1751373 other upstream 650407 24520735 ~ 24522946 (+) False LOC110495887
TU1749630 other upstream 2012062 23158833 ~ 23161291 (+) True G1528194
TU1752534 other downstream 392907 25566471 ~ 25571346 (+) True G1530785
TU1752680 other downstream 664942 25838506 ~ 25839735 (+) False G1530923
TU1752681 other downstream 664942 25838506 ~ 25839735 (+) False G1530923
TU1753186 other downstream 760616 25934180 ~ 25934958 (+) False LOC110496782
TU1753187 other downstream 760616 25934180 ~ 25943678 (+) True LOC110496782

Expression Profile