RNA id: TU1752833


Basic Information

Item Value
RNA id TU1752833
length 2403
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G1531057
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25407171 ~ 25409573 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGCATGAACATAAAGCACTTAgctaactactgtaacatttgTATAATGAATGAATAGGGACTCCTATGTCTTTCCATGCCAATATTCAACAGCATACAGTCCCGTGTGGTTAACTTGCGACGCCGTGGCTATGGGATCGATTGTCATGGGGGACCAGTTAAAAgtgtgaaaatgtatgcactcactctggataagagcgtctactaAATGACTCCAAAAAAGGAATAAAGGGAGATCTCATCCATCTTTAAAATGATATCTTTATTGTTTGATCATTgaaataaatacagtaccagtcaaaagtttggacattccagggtttttctttatttttgactattttctacattgtagaataatagtgaagacaaactatgccgcaccaatgtgtcggaggaaacaccgtgcacctggcaaccttggttagcgtgcactgcgcccggcccgccacagaagtcgctggtgcgagatgagacaaggatatccctaccggccaaacccaccctaacccggacgatgctaggccgacctcccggtcacggccggttgcgacagagcctggacctcACTGTTTTCTCATATATTTTtcatcgccccagtctgaggtcctgtgcgctctggagcaggttttcatcaaggatctctgtactttgctccattaatctttccctcgatcctgactagtctcacagtcccccCCGCTgtaaaacatcaccacagcatgatgctgccaccaccatgcttcaccgtaggaatggtgccaggtttcctccagatgtgacacttggcattcaggccaaagagttttatcttggtttcatcagaccagagaatcttgatcctcatagtctgagagtcctttaggtgccttttggcaaattccaagcgggctgtaatGTGCCTTGTACTGAGAGGTGGCTTCCGTCTAATGTGtgcgctgggagtcgggaagcaggttcagggagtgaataatttaataaataaacaaaacataatacagaacaagaaacacgaacaacgcacagacatgaatcTGTAACAGAAACAATAACCCCTGGAGAAGGATCCAAAGGAAGTGacatatatatagggaaggtaatcaggcaggtgatggagtccaatactgcagaaatgtattggtacccttccccagatctatgcctcaacacaatcctgtctgagctttacggacaattccttcgacctcatggcttgatttttgctctgacatacactgtcaaccgtgggaccttatatatagacaggtgtgtgcctttccaagtcatgtcaaataaattgaatttaccacaggtggactccaatcaagttgtagcaacGTCTgaagtatgatcaatggaaacaggatgcactggagctcaatttcgagtctcatagcaaagggtctgaatacttatgcaaatgtatttttttattttttattattataaatgttcaacaatttctaaaaacctgttttcaccttgtcattatgggctattgtgtgtagattgatgagggggaaaaaactatttaatccatcttcgaataaggctgtaatgtaacaaaatgtggaaaaactcaatactttccgaatgcactgtatgctaaTAAAATGGCATAAATAAAATCCATATTGTGAAGCCGAACATGATTCACATCAATGCTATTAAACTCACCAGATGCTGATTGTGAAGTTGTACTATCAGCCGAGGCTCCACAGTTCGATTCAACTAGATTGCCAAGAACATGGACCAATGAGCTTCCACGACTCAGAATGGCTGTCTTCAGCGGTGTCAAATGATTGAACTGGACAGACGACAGGCAGCCAATGAAACCCTTGGATCCTGCCCTAAGCACTTCCTCATCCAAACAAGCATGTCCTGCTGATGTACCTGTGACTTTACCTAAAGTCAGAGATCGTAGTGTGTTCATCTTCATGCCAGAAAAGGGTTGTATTTTTGGTCGATGTCTTTGTCAATCTGGTTTAAGAAAAAAGGAAACATTTCCAAATACAGTTCAACATGCCATCAAGGTGGGCTGACTGTCTATGCTGTAAGCATAATGCTTTGCTATGTTGAAATATATTccgattgtcacgccctggccatagagaggcttttattctctattttggttaggccagggtgtgacttgggtgccCATTCTATGTTCGTTTTCTATGTTTTtcttgtttggccgggtgtggttctcaatcagaggcagctgtctatcgttctCTGAcggagaaccatacttaggtagtctTTCCCACCTGAGTTTTGTGGGtagttttctgtttagtgtttgtaTCGCCGTTAagaactgtttcggttattccttttgttactttgtatttaaGTGCTCCGTTCTATGTAATaaatatgaacacgtaccacgctg

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1752873 lncRNA downstream 21421 25385272 ~ 25385750 (-) True LOC110497105
TU1752821 lncRNA downstream 71211 25333565 ~ 25335960 (-) True G1531050
TU1752810 lncRNA downstream 124321 25282646 ~ 25282850 (-) True G1531039
TU1752798 lncRNA downstream 146768 25257000 ~ 25260403 (-) False LOC110495901
TU1752799 lncRNA downstream 149334 25257000 ~ 25257837 (-) True LOC110495901
TU1752839 lncRNA upstream 60052 25469625 ~ 25480582 (-) True G1531063
TU1752910 lncRNA upstream 78247 25487820 ~ 25488050 (-) True G1531132
TU1752912 lncRNA upstream 79123 25488696 ~ 25488908 (-) True G1531134
TU1752926 lncRNA upstream 111823 25521396 ~ 25525185 (-) True G1531145
TU1752891 lncRNA upstream 118787 25528360 ~ 25530613 (-) True LOC110495912
XM_021571426.2 mRNA downstream 12026 25392267 ~ 25395145 (-) False LOC110495907
XM_021571427.2 mRNA downstream 12026 25392267 ~ 25395145 (-) True LOC110495907
LOC110497105 mRNA downstream 15807 25377735 ~ 25391364 (-) False LOC110497105
XM_021571423.2 mRNA downstream 29635 25348864 ~ 25377536 (-) True LOC110495906
XM_036952412.1 mRNA downstream 63672 25283955 ~ 25343499 (-) False LOC110495905
NM_001124707.1 mRNA upstream 827 25410400 ~ 25427083 (-) True stat1-1
XR_002469620.2 mRNA upstream 28350 25437923 ~ 25440347 (-) True LOC110496923
XM_036952416.1 mRNA upstream 44168 25453741 ~ 25474749 (-) True LOC110495910
XM_021571431.2 mRNA upstream 81945 25491518 ~ 25498650 (-) False LOC110495911
XR_002469488.2 mRNA upstream 81945 25491518 ~ 25498651 (-) True LOC110495911
TU1752728 other downstream 256177 25150068 ~ 25150994 (-) True G1530967
TU1751283 other downstream 1013487 24393375 ~ 24393684 (-) True G1529613
TU1751211 other downstream 1123177 24283591 ~ 24283994 (-) True LOC110497104
TU1751209 other downstream 1126725 24279738 ~ 24280446 (-) False LOC110497104
TU1750685 other downstream 1863678 23542606 ~ 23543493 (-) True LOC110495852
TU1752921 other upstream 109848 25519421 ~ 25523180 (-) True G1531142
TU1752958 other upstream 163865 25573438 ~ 25573671 (-) True LOC110495915
TU1753025 other upstream 286966 25696539 ~ 25708874 (-) True G1531236
TU1755359 other upstream 1778049 27187622 ~ 27188230 (-) False G1533378
TU1755360 other upstream 1778049 27187622 ~ 27189549 (-) True G1533378

Expression Profile