RNA id: TU1753743



Basic Information


Item Value
RNA id TU1753743
length 434
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G1531911
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 26448929 ~ 26449362 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgctgtatggcattgaagctcgtttggaggttagatagcacagtgtccaaggacgggccggaagtatatagaatggtgtcgtctgcgtagaggtggatcagggaatcgcccgcagcatgagaaacatcattgatatatacagagaaaagagtcggcccgagaattgaaccctgtggcacccccatagagactgccagaggaccggacaacatgccctccgatttgacacactgaactctgtctgcaaagtaattggtgaaccaggcaaggcagtcatccgaaaaaccgaggctactgagtctgccgataagaatacggtgattgacagagtcgaaagccttggcaaggtctatgaagacggctgcacagtactgtcttttatcgatggcggttatgatatcgtttagtaccttgagcgtggctgaggtacacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1753740 lncRNA upstream 416 26448101 ~ 26448513 (+) True G1531908
TU1753739 lncRNA upstream 847 26447796 ~ 26448082 (+) True G1531907
TU1753722 lncRNA upstream 10399 26438251 ~ 26438530 (+) True G1531890
TU1753594 lncRNA upstream 108629 26340094 ~ 26340300 (+) True G1531762
TU1753593 lncRNA upstream 109851 26338824 ~ 26339078 (+) True G1531761
TU1753781 lncRNA downstream 30985 26480347 ~ 26480564 (+) True G1531949
TU1753803 lncRNA downstream 55570 26504932 ~ 26505207 (+) True G1531971
TU1753814 lncRNA downstream 64286 26513648 ~ 26514901 (+) False G1531978
TU1753823 lncRNA downstream 64728 26514090 ~ 26514901 (+) True G1531978
TU1753831 lncRNA downstream 83425 26532787 ~ 26589503 (+) True G1531983
XM_021571450.2 mRNA upstream 181797 26253121 ~ 26267132 (+) False kynu
XR_002469489.2 mRNA upstream 181797 26253121 ~ 26267132 (+) True kynu
XM_021571451.2 mRNA upstream 183933 26253121 ~ 26264996 (+) False kynu
XR_002469490.2 mRNA upstream 183971 26253121 ~ 26264958 (+) False kynu
XM_021571447.2 mRNA upstream 475610 25961717 ~ 25973319 (+) True bzw1a
XM_036952438.1 mRNA downstream 533619 26982981 ~ 27032712 (+) False LOC110495930
XM_021571460.2 mRNA downstream 533625 26982987 ~ 27032712 (+) False LOC110495930
XM_021571458.2 mRNA downstream 533626 26982988 ~ 27032712 (+) False LOC110495930
XM_021571459.2 mRNA downstream 533633 26982995 ~ 27032712 (+) False LOC110495930
XM_036952437.1 mRNA downstream 563614 27012976 ~ 27032712 (+) False LOC110495930
TU1753187 other upstream 505251 25934180 ~ 25943678 (+) True LOC110496782
TU1753186 other upstream 513971 25934180 ~ 25934958 (+) False LOC110496782
TU1752680 other upstream 609194 25838506 ~ 25839735 (+) False G1530923
TU1752681 other upstream 609194 25838506 ~ 25839735 (+) False G1530923
TU1752534 other upstream 877583 25566471 ~ 25571346 (+) True G1530785
TU1754169 other downstream 308007 26757369 ~ 26757677 (+) True G1532307
TU1754835 other downstream 1187178 27636540 ~ 27651825 (+) True LOC110495947
TU1755008 other downstream 1497716 27947078 ~ 27950222 (+) True LOC110495958
TU1755074 other downstream 1525451 27974813 ~ 28038476 (+) True G1533121
TU1756511 other downstream 2283413 28732775 ~ 28735228 (+) False LOC110495972

Expression Profile