RNA id: TU1753781



Basic Information


Item Value
RNA id TU1753781
length 218
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1531949
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 26480347 ~ 26480564 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aggcaagtcagttaagaacaaattcttattttcaatgacggcctaggaacagttggttataactgcctgttcaggggcagaacgacagatttgtaccttgtcagctctgggattttaTTTTGCAacattccggttactagtccaacgctctaaccacgaggctaccctgccgccccagctgTTATACATAGACcgtcaccccttgtcttaccagaagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1753743 lncRNA upstream 30985 26448929 ~ 26449362 (+) True G1531911
TU1753740 lncRNA upstream 31834 26448101 ~ 26448513 (+) True G1531908
TU1753739 lncRNA upstream 32265 26447796 ~ 26448082 (+) True G1531907
TU1753722 lncRNA upstream 41817 26438251 ~ 26438530 (+) True G1531890
TU1753594 lncRNA upstream 140047 26340094 ~ 26340300 (+) True G1531762
TU1753803 lncRNA downstream 24368 26504932 ~ 26505207 (+) True G1531971
TU1753814 lncRNA downstream 33084 26513648 ~ 26514901 (+) False G1531978
TU1753823 lncRNA downstream 33526 26514090 ~ 26514901 (+) True G1531978
TU1753831 lncRNA downstream 52223 26532787 ~ 26589503 (+) True G1531983
TU1754125 lncRNA downstream 244913 26725477 ~ 26725760 (+) True G1532263
XM_021571450.2 mRNA upstream 213215 26253121 ~ 26267132 (+) False kynu
XR_002469489.2 mRNA upstream 213215 26253121 ~ 26267132 (+) True kynu
XM_021571451.2 mRNA upstream 215351 26253121 ~ 26264996 (+) False kynu
XR_002469490.2 mRNA upstream 215389 26253121 ~ 26264958 (+) False kynu
XM_021571447.2 mRNA upstream 507028 25961717 ~ 25973319 (+) True bzw1a
XM_036952438.1 mRNA downstream 502417 26982981 ~ 27032712 (+) False LOC110495930
XM_021571460.2 mRNA downstream 502423 26982987 ~ 27032712 (+) False LOC110495930
XM_021571458.2 mRNA downstream 502424 26982988 ~ 27032712 (+) False LOC110495930
XM_021571459.2 mRNA downstream 502431 26982995 ~ 27032712 (+) False LOC110495930
XM_036952437.1 mRNA downstream 532412 27012976 ~ 27032712 (+) False LOC110495930
TU1753187 other upstream 536669 25934180 ~ 25943678 (+) True LOC110496782
TU1753186 other upstream 545389 25934180 ~ 25934958 (+) False LOC110496782
TU1752680 other upstream 640612 25838506 ~ 25839735 (+) False G1530923
TU1752681 other upstream 640612 25838506 ~ 25839735 (+) False G1530923
TU1752534 other upstream 909001 25566471 ~ 25571346 (+) True G1530785
TU1754169 other downstream 276805 26757369 ~ 26757677 (+) True G1532307
TU1754835 other downstream 1155976 27636540 ~ 27651825 (+) True LOC110495947
TU1755008 other downstream 1466514 27947078 ~ 27950222 (+) True LOC110495958
TU1755074 other downstream 1494249 27974813 ~ 28038476 (+) True G1533121
TU1756511 other downstream 2252211 28732775 ~ 28735228 (+) False LOC110495972

Expression Profile