RNA id: TU1755199


Basic Information

Item Value
RNA id TU1755199
length 2578
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G1533235
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27027800 ~ 27032702 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATACTTTATTTTAGGGACAATAGCATACAATTTCTCTGTACAATATTTAACATCCACTTCCAACCAGGCATCTGAAAAGTTTGTTAAATAACTTGCAAAGCATAAAAATTATTGGCAAGTCCACTAGCCAATTGAACAGTCATTTGTGCCAAGTCACACTGTTTTGACTATCAGCAAATAAAGAACTGAAGCGAACCTAGGTTTAGCTTTAGTGTTGTTTTGAGAGGAAGTGTGTTACAGAAAACACTGTCTGCTGGTCACATACAAGGGATAACATTCTTGCAACACTGCTGGAATATTGTAGCAATGGTATCTCAATGCTGTAGAGTAACATCTGGGGTCTGAGCTAGGATGTCTGAGGTAAAACAATGACCggtttcacactactgagccaacCCAAACCATCATTTGCTGGCTCTGATATTTTCCGATCACATTGTCATTTTcagcaactatggtggatgcTTAACCAGGCCACCCCAGTCCGACTCGGTCCGGCTTAGTTTGGCTCACctcagtagtgtgaaaatggTAAAACTATTGATTCAGGGTTTCATTTGAGGGAATTTTCATCAGACCACCTTAGAAAGAAATGAGTCTCATCTGGGGAAGGAAGAGTGACCGTTTTGGTCATTAATTGAAACAATTTaaaaacatagacatacaaaataAACAGGTCAAATCTTATTATGGAATAATTCATTCATCAGGGATTTTTTTGCTTCTTTGTGATATATTCTAAAAACAATAGAAACAACCTCATGCTATATCCATCCTCTACGATCTAAAAATGacatatatatttacataatgtGCATTTCAATATTCCAGTcaaatctgaagtcaaatgttatTTGGGCTTTCTGAAGTTTATCTGAAAGAAAATCACCTCTCACAAGAAGGCCAAGGTCTGATCAACTAAGAAGATTGTAGTGTGGTTTGGGGTTTTAAAACGTCTGTACAGTGAAATCAGCTCTGTACAAGTAGCTGTGGTTGAAAAATAAAAATCAGGTACACAAAATGATACCCTCAAAATACCAGAAATCAGAGGATCACATCGTGGCtacatatttattttttctcaAAAGCACATACGACAATCAAAATAatgcagtagtactgtagtgatTGTATATCTGATTGTTGGTTCACCGCTAACTGCTTGGAAACTCGTGCCCCTTCCACTCTTCCTCTAATGCCATTTGCTTGCTAGTTGTATTGCTGAGCGCTACAGGGTTCCAGtgtgtagggagggagggggaggggggggttcaCAGTAACGACCACCATTCGACAGCTTTCTCAATTAAAATGTCCTTGAATcctcacatcccctctcctcctcctcaaccataTTAGGCAAGGAGACAGGATGTGAGGAACCAAGGAAAGACAAATTGTGATAGAGCCTACATCCGCTGCGAGACCACTGGCCAACTGCAGCCTTTACCCCGAGAGTACAGACACAATCTAGTAATGCAGTTGGGCCTTCCCTAAGTCCGTTCCACTGTCTTTCAGATAAGAGGTAAAGTAATAGTTTGATTTGGCACCTGCCCACCTGCTCTCTGTCTAATACTCAAAAGCTCAGGTCTGCAAATAATGAAAAGATCAACAGACAAGAttaactgtttaaaaaaatgctACAGTGGTGTGAAAGtcgctcctgcagcaatgcaAGTACGCACGCACTTGCACCATTCTGCACGAGttgcatatactgtagtaattactGAAAAGCATAGTATTGAATCCCTGAACGTTGTTGTAGTTCCAGTTTAAACACGGACTAGGTGTGAAGAGAGAGAATGCAAAGATGAACGCATCATCATCCGTGTCAATGTCACCCAGAAGACAAATCTGAGTTCATACAACAAGCTAGAAATGGAACACATTCACAAATCAAATTCCGGAAGGACGACGAGAGACATCCTAGTTTTGCCCAGGGTGGGTCTACAGTAGTAACGTTGTCACACTGATTAAAGGCTCAACCGAGTTGAGATGATAGAGGCTAGAAGTTGAGATGTTTTAACGCTATGGTTGAGATGACACCAGGAAGAGATGGGTCACCGGCGTCTCAAAGCAGAAGGGTAGTAGTTAGGGACTGGAGAGACAGAAGGTTAGTAGCTAGGAACTGTGAGAGCGAGAAGGGTAGTAGCTAGGGACTCGGGAGAGACATAAGGGTAGTAGCTACGGACAGGGTGAGACAGAAGGATAGTAGCTACAGACAGGGTGAGACAGAAGGGTAGTAGCTAGGGACAGGGTGAGACAGAAGGGTAGTAGCTACAGACAGGGTGAGACAGAAGGGTAGTAGCTACAGACAGGGTGAGACAGAAGGGTAGTAGCTACAGACAGGGTGAGACAGAAGGGTAGTAGCTACAGACAGGGTGAGACAGAAGGGTAGTAgctacagacaggtgagacagaagGGTAGTAGCTACAGACAGGGTGAGACAGAAGGGTAGTAGCTACGGACAGGGTGAGACAGAAGGGTAGTAGCTacggacagggagagacagaagggtaGTAGCTACAGACAGGGTGAGACAGAAGGGTAGTAGCTACAGACAGGGTGAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1754368 lncRNA downstream 135967 26893415 ~ 26893662 (-) True G1532505
TU1754367 lncRNA downstream 136349 26892971 ~ 26893280 (-) True G1532504
TU1754331 lncRNA downstream 162517 26866821 ~ 26867112 (-) True G1532468
TU1754299 lncRNA downstream 188519 26840705 ~ 26841110 (-) True G1532436
TU1754236 lncRNA downstream 232936 26796474 ~ 26796693 (-) True G1532374
TU1755259 lncRNA upstream 3073 27035775 ~ 27115226 (-) True G1533288
TU1755348 lncRNA upstream 137886 27170588 ~ 27171054 (-) True G1533367
TU1755362 lncRNA upstream 156920 27189622 ~ 27189973 (-) True G1533380
TU1755365 lncRNA upstream 160456 27193158 ~ 27193378 (-) True G1533383
TU1755369 lncRNA upstream 163133 27195835 ~ 27196116 (-) True G1533387
XM_036952430.1 mRNA downstream 437434 26513620 ~ 26592195 (-) False LOC110495928
XM_021571461.2 mRNA upstream 32327 27065029 ~ 27083077 (-) True LOC110495931
XM_021571463.2 mRNA upstream 64278 27096980 ~ 27140486 (-) False LOC110495932
XM_021571465.2 mRNA upstream 64278 27096980 ~ 27140486 (-) False LOC110495932
XM_021571462.2 mRNA upstream 64278 27096980 ~ 27140487 (-) False LOC110495932
XM_021571464.2 mRNA upstream 64278 27096980 ~ 27140487 (-) True LOC110495932
TU1753025 other downstream 1320755 25696539 ~ 25708874 (-) True G1531236
TU1752958 other downstream 1455958 25573438 ~ 25573671 (-) True LOC110495915
TU1752921 other downstream 1506449 25519421 ~ 25523180 (-) True G1531142
TU1752728 other downstream 1878635 25150068 ~ 25150994 (-) True G1530967
TU1751283 other downstream 2635945 24393375 ~ 24393684 (-) True G1529613
TU1755359 other upstream 154920 27187622 ~ 27188230 (-) False G1533378
TU1755360 other upstream 154920 27187622 ~ 27189549 (-) True G1533378
TU1755743 other upstream 721472 27754174 ~ 27798613 (-) True LOC110495948
TU1755806 other upstream 828344 27861046 ~ 27914520 (-) True LOC110496785
TU1755852 other upstream 1002262 28034964 ~ 28036616 (-) False LOC110495955

Expression Profile