RNA id: TU1755370


Basic Information

Item Value
RNA id TU1755370
length 2595
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id G1533388
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27196603 ~ 27207572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAGACAGTCAAGATAACACTAGCCAAGAAACAATAAGGTGCTGCTTGGATATTGTTTAGTACTATTTAAGTATTAAGGAAGCAATAGAGAAGTTTTGAGATGATGGCCAATGTTTTTTTCATGGTTTTGTTTGTCCTTTCAACATTCCGAGGTAAATATTCTCTGAACCTAACCGAACCTTGTAAGAATGGAACCACTGGAACAACAGATGTAAAAAAGCTTGAACGTCTTGGCTTTATTCGACTGTCTATCACGTGTCTGGGTTTGTCGATCATGCTCATTCTCTCATATGCTGTCATCACCCTCCTTCACAAACTGAAGATACACAGGTCCCTGGTATGCGTGAGAAGAAAGTAGGCAGAGGGCACAGAAGCTACAAAGAGAAGATCAACTCAATCTACATGCTCATGCCTGACAAATTACCAGCACAGGGAGCAGGACATGACCTTTGACCTGGAAGGTCTCTATCTGGGTGCGTCCCAAAAGCATCCACACTTGTACTTTCCGATCACTTTATATGGTGTCTAAATTAGTTTGCTATAGCCTGTTAATGGAATGCTGCACAAGGTCCACCTTATGGCAACACCTTTATGTACACCACCCACAGACTGTGCCATATAAAAACACCCTTTGGATAATAGTAGAGAAAGAATGCgtctgctaaatggcatatattattattatgttacgAAACTCTCATTATGTGGTCATATGGCTCATCATGTGAACATATGAACATACAAGGAGGAATGTCATACCTCACACACACCAAATTGATATGTGCAATCTATGCTCTAGACTGCTTGGCCACTTGGAGTCAAGTCTTCAGTTTTAATCAGCTTTTAGACAAGTTAAGGCACACAGTATGCATTTGCAGTCCCACGAGCTAGCTCACAGTGTAGCAAGCCTGGCTCCTGAAAATGGTCACAGTTTGTGGCCAGGGCTTGAATCCCAGATGAGATATTATTTTAACACTTTATACTGTAGAATTATAAttattgtgttagtgtgttgcGAAGGGAAGTGCAGCCAACGCCTTGAAAAGATGAAGAATAAACGTAATGAGGAGCTACGTCTTTCTTCAGCCATATAGACAAAAATACATGGCTAATAATGATGTTTattgtataggctatattacatagaCGTGTACACTTAAATGTAGAATATATTAAATGCATTATTATAATAATCCTCCACTtcgtcacatgtgcaaccagaagtGAATCTTTTTTCCCTCTAACGCCCAGTTACTGCAACCCAAAGATTCTGAGTTTACCGCCTTAGTGGTGTATTCCACCTGGCAGCCTtaacactgcgccactcaggaggcacATGCCAGTTATCTGACAAGGCCATTAACCTCTTtgacttaaaaaaaacaaaacaatgtacAAATATAAATTGTCATGTTGTATAGACCTATGTATTTATCTTTTAAAAACGTGTGTGAAACGGATACGCAAACAGGTGGAATTTTATTgtacagatgtcggatcttaatttgagcctgtTTCATAGCAGgaggaaataatcctgcagcaggagGGTTTGAATAGCTGAAGAAGTATTTATACATAGCCTAACTATAAAACAGGGGTGAGCATGAAGTTTATCGTTCTACTTAGTAGACCTACATCTGTCAATCAACTGATGGGCCAAATCATCTCAACACCACCTTTCATTATATGTTTAGGCTAACGGGTAGCCGACAGAACACTTTGGATAAatgcgtctgctaaatggcatacatTTTATTATTGGGATATAATCAAATAACAAGGGGCCTGTTGCAACCATCTATGGCACTAGATGAACCATCAACGGCACGAGATTATCGCTAGCTGAtgttttgttaaatcatcacttCGTGTGAAATTCACCCACAAAACTGATCTCAATTGCAGCCATTATTGGTCACATCATTACTGCTCAATAAAAGATTATGTAAGTgttactgtcacgtcctgaccttagttccttttttacgtctctattttggtttggtcagggcgtgagttggggtgggaattGTTGTTAATTCTATGTTTTATTCTGTGtggtgtatttctgtgtttggcctggtatggttcccaatcagaggcaatcgttgtctctgattgagaaccatacttaggtagcctgttcccacctgtgtttgggggtagttgttttctgtctctgtaccaaacagaactgttttgtgttggtctatttttattattttgtcttagtggtctgagttaaaataaatattaacataaacacttaccacgctgcgttttggtccgatcttgactactcttcATCAGACGAAGAGGATCATTACAGTTACCTCAGTCCTTCTTGCAACCAAAGTCCTTTAAGATATGTTCAccctctggttggtattatcttcGGAACTATTTAGTCCTTTTTAACAGGCTAAGGGTGATTTATCTAGTGGACAAGCATTCCATACAACATAAATCAAGTATTTGCTCATttaccactgcaaatctactgtGGCAATTTACCCGACACTTTGTATGAATGAAAACTTTTGGTGTAGCctgttattatttttatttgtgttAGCCATTAAAATACTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1755369 lncRNA downstream 487 27195835 ~ 27196116 (-) True G1533387
TU1755365 lncRNA downstream 3225 27193158 ~ 27193378 (-) True G1533383
TU1755362 lncRNA downstream 6630 27189622 ~ 27189973 (-) True G1533380
TU1755348 lncRNA downstream 25549 27170588 ~ 27171054 (-) True G1533367
TU1755259 lncRNA downstream 81377 27035775 ~ 27115226 (-) True G1533288
TU1755398 lncRNA upstream 35241 27240610 ~ 27240818 (-) True G1533415
TU1755401 lncRNA upstream 37456 27242825 ~ 27243377 (-) True G1533418
TU1755402 lncRNA upstream 58610 27263979 ~ 27264180 (-) True G1533419
TU1755403 lncRNA upstream 59256 27264625 ~ 27264846 (-) True G1533420
TU1755407 lncRNA upstream 71059 27276428 ~ 27276700 (-) True G1533424
XM_021571467.2 mRNA downstream 11155 27158978 ~ 27185448 (-) True LOC110495935
XM_021571466.2 mRNA downstream 40316 27152195 ~ 27156287 (-) True LOC110495934
XM_021571462.2 mRNA downstream 56116 27096980 ~ 27140487 (-) False LOC110495932
XM_021571464.2 mRNA downstream 56116 27096980 ~ 27140487 (-) True LOC110495932
XM_021571465.2 mRNA downstream 56117 27096980 ~ 27140486 (-) False LOC110495932
XM_021571469.2 mRNA upstream 9697 27215066 ~ 27219473 (-) True LOC110495936
XM_036952443.1 mRNA upstream 52117 27257486 ~ 27292406 (-) False LOC110495938
XM_036952442.1 mRNA upstream 53471 27258840 ~ 27280895 (-) False LOC110495938
XM_036952439.1 mRNA upstream 53471 27258840 ~ 27292407 (-) False LOC110495938
XM_036952445.1 mRNA upstream 53471 27258840 ~ 27292407 (-) False LOC110495938
TU1755360 other downstream 7054 27187622 ~ 27189549 (-) True G1533378
TU1755359 other downstream 8373 27187622 ~ 27188230 (-) False G1533378
TU1753025 other downstream 1487729 25696539 ~ 25708874 (-) True G1531236
TU1752958 other downstream 1622932 25573438 ~ 25573671 (-) True LOC110495915
TU1752921 other downstream 1673423 25519421 ~ 25523180 (-) True G1531142
TU1755743 other upstream 548805 27754174 ~ 27798613 (-) True LOC110495948
TU1755806 other upstream 655677 27861046 ~ 27914520 (-) True LOC110496785
TU1755852 other upstream 829595 28034964 ~ 28036616 (-) False LOC110495955
TU1756202 other upstream 1146009 28351378 ~ 28352618 (-) True LOC110495963
TU1758870 other upstream 3079003 30284372 ~ 30284762 (-) True G1536703

Expression Profile