RNA id: TU1755401


Basic Information

Item Value
RNA id TU1755401
length 553
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1533418
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27242825 ~ 27243377 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attagaatgtctatttttggataatactgttggccggttgcagttatctgttctctgtcagggttCAGTTACTTGGGCTGCAGAGAGGGGTGAGCTTGTcttcatgtgtaaacatatcttttaaaccatgttaaaggatgattgagggggaaccaattatctcttgactccacaatgtctgtgtgccagtcactgtgtctctgtgagcTTGTCCAGAATGGGAGTGTCTAAAATGACAATTGATATATATCCTAATGTCTTGGTACTAtgttgtaccaagaacgagaagtagaacCTCGTTTTAGGAgagcaaactgaacgataatttatagctaatgctgtctggctatggaatactcctctctcaagtaaagtcttcctttgtaatgttcctaagatctgttattcgtcatgtgagttgagatgggtgtgtcttggctataaatgatactaagaactgttttgtaagcactctcagagaattcatttatagacactgaattgatctgagagtcacagggttgtgatggagctcatataattaaagatggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1755398 lncRNA downstream 2007 27240610 ~ 27240818 (-) True G1533415
TU1755371 lncRNA downstream 35253 27196603 ~ 27207572 (-) True G1533388
TU1755370 lncRNA downstream 37456 27196603 ~ 27205369 (-) False G1533388
TU1755369 lncRNA downstream 46709 27195835 ~ 27196116 (-) True G1533387
TU1755365 lncRNA downstream 49447 27193158 ~ 27193378 (-) True G1533383
TU1755402 lncRNA upstream 20602 27263979 ~ 27264180 (-) True G1533419
TU1755403 lncRNA upstream 21248 27264625 ~ 27264846 (-) True G1533420
TU1755407 lncRNA upstream 33051 27276428 ~ 27276700 (-) True G1533424
TU1755425 lncRNA upstream 54612 27297989 ~ 27298441 (-) True G1533437
TU1755440 lncRNA upstream 68361 27311738 ~ 27312047 (-) True G1533452
XM_021571469.2 mRNA downstream 23352 27215066 ~ 27219473 (-) True LOC110495936
XM_021571467.2 mRNA downstream 57377 27158978 ~ 27185448 (-) True LOC110495935
XM_021571466.2 mRNA downstream 86538 27152195 ~ 27156287 (-) True LOC110495934
XM_021571462.2 mRNA downstream 102338 27096980 ~ 27140487 (-) False LOC110495932
XM_036952443.1 mRNA upstream 14109 27257486 ~ 27292406 (-) False LOC110495938
XM_036952442.1 mRNA upstream 15463 27258840 ~ 27280895 (-) False LOC110495938
XM_036952439.1 mRNA upstream 15463 27258840 ~ 27292407 (-) False LOC110495938
XM_036952445.1 mRNA upstream 15463 27258840 ~ 27292407 (-) False LOC110495938
XM_036952446.1 mRNA upstream 15463 27258840 ~ 27292407 (-) False LOC110495938
TU1755360 other downstream 53276 27187622 ~ 27189549 (-) True G1533378
TU1755359 other downstream 54595 27187622 ~ 27188230 (-) False G1533378
TU1753025 other downstream 1533951 25696539 ~ 25708874 (-) True G1531236
TU1752958 other downstream 1669154 25573438 ~ 25573671 (-) True LOC110495915
TU1752921 other downstream 1719645 25519421 ~ 25523180 (-) True G1531142
TU1755743 other upstream 510797 27754174 ~ 27798613 (-) True LOC110495948
TU1755806 other upstream 617669 27861046 ~ 27914520 (-) True LOC110496785
TU1755852 other upstream 791587 28034964 ~ 28036616 (-) False LOC110495955
TU1756202 other upstream 1108001 28351378 ~ 28352618 (-) True LOC110495963
TU1758870 other upstream 3040995 30284372 ~ 30284762 (-) True G1536703

Expression Profile