RNA id: TU1754644



Basic Information


Item Value
RNA id TU1754644
length 379
lncRNA type antisense_over
GC content 0.60
exon number 1
gene id G1532735
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27275190 ~ 27275568 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTGCGTGTTAGCCGATGGGGAGTTCCTCACTTTGGGATTGCTGGAATGCATTGACGGCGATCCCAGGGAGACAGAGGATGGAGTCAAGTGCTGGTGCGGGCTGGCCGAGGGTGTGGCCTTGGCCCGGGTGTTCCTGTGGCCTGTGCCGGCAAGGGCGGAGTTAGCGGCGGGGCTGTGGTTATTAGAGGAGGGGTTAATGTGGCTATTGGCTCGGCCACTGTCTGGGCCTGCCTCGTCCCGCTCCTTCTTGACGCGCTCTTTCCGGCTAAAGTTTCCTGCTGCTCTTTCTTCTTGCACCTCCAGCATCATCTGGATGTCAGTACGTGTGAGGTGCTGTGTGCCTGGAGTCTCCTCAAGGAGCTCTCACAGTCCTTGGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1754641 lncRNA upstream 2084 27272799 ~ 27273106 (+) True G1532733
TU1754640 lncRNA upstream 5330 27269233 ~ 27269860 (+) True G1532732
TU1754639 lncRNA upstream 6076 27268533 ~ 27269114 (+) True G1532731
TU1754623 lncRNA upstream 31855 27242755 ~ 27243335 (+) True G1532721
TU1754614 lncRNA upstream 52995 27221949 ~ 27222195 (+) True G1532712
TU1754653 lncRNA downstream 16423 27291991 ~ 27292280 (+) True G1532744
TU1754657 lncRNA downstream 21871 27297439 ~ 27297750 (+) True G1532748
TU1754661 lncRNA downstream 27369 27302937 ~ 27303238 (+) True G1532752
TU1754667 lncRNA downstream 37771 27313339 ~ 27313653 (+) True G1532758
TU1754673 lncRNA downstream 45337 27320905 ~ 27321122 (+) True G1532764
XM_036952447.1 mRNA upstream 18456 27246353 ~ 27256734 (+) True LOC110495937
XM_021571471.2 mRNA upstream 19321 27246352 ~ 27255869 (+) False LOC110495937
XM_021571470.2 mRNA upstream 19321 27246353 ~ 27255869 (+) False LOC110495937
XM_021571459.2 mRNA upstream 242478 26982995 ~ 27032712 (+) False LOC110495930
XM_021571473.2 mRNA downstream 119950 27395518 ~ 27457227 (+) False LOC110495939
XM_036952448.1 mRNA downstream 119950 27395518 ~ 27457227 (+) False LOC110495939
XM_021571474.2 mRNA downstream 119951 27395519 ~ 27457227 (+) False LOC110495939
XM_021571475.2 mRNA downstream 119951 27395519 ~ 27457227 (+) False LOC110495939
XM_021571477.2 mRNA downstream 119951 27395519 ~ 27457227 (+) True LOC110495939
TU1754169 other upstream 517513 26757369 ~ 26757677 (+) True G1532307
TU1753187 other upstream 1331512 25934180 ~ 25943678 (+) True LOC110496782
TU1753186 other upstream 1340232 25934180 ~ 25934958 (+) False LOC110496782
TU1752680 other upstream 1435455 25838506 ~ 25839735 (+) False G1530923
TU1754835 other downstream 360972 27636540 ~ 27651825 (+) True LOC110495947
TU1755008 other downstream 671510 27947078 ~ 27950222 (+) True LOC110495958
TU1755074 other downstream 699245 27974813 ~ 28038476 (+) True G1533121
TU1756511 other downstream 1457207 28732775 ~ 28735228 (+) False LOC110495972
TU1756512 other downstream 1457207 28732775 ~ 28734991 (+) True LOC110495972

Expression Profile