RNA id: TU1755425



Basic Information


Item Value
RNA id TU1755425
length 453
lncRNA type intronic
GC content 0.39
exon number 1
gene id G1533437
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27297989 ~ 27298441 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttttcgcaaatgcgcttttgttaaatcatcccccagtgttgcatcgattatatgcaacgcaggacacgctagataaactagtaagatcatcaaccatgtgtagttataactagtgattatgattgattgattgttttttataagataagtttaatgctagctagcaacttaccttggcttctactgcattcgcgtaacaggcaggctcctcgtggagtgcaatgaaaggcaggtggttagagcattggactagttaactgtaaggttgcaagattagatccccagagctgacaaggtgaaaatctgtcgttctgcccctgaacaaggcagttaacccaccgttcctaggccgtcattgaaaataagaatgtgttcttaactgacttgcctagttaaataaaggtataaaaaattataataataataataaatgaaaaaatcggcaaaatcggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1755407 lncRNA downstream 21289 27276428 ~ 27276700 (-) True G1533424
TU1755403 lncRNA downstream 33143 27264625 ~ 27264846 (-) True G1533420
TU1755402 lncRNA downstream 33809 27263979 ~ 27264180 (-) True G1533419
TU1755401 lncRNA downstream 54612 27242825 ~ 27243377 (-) True G1533418
TU1755398 lncRNA downstream 57171 27240610 ~ 27240818 (-) True G1533415
TU1755440 lncRNA upstream 13297 27311738 ~ 27312047 (-) True G1533452
TU1755450 lncRNA upstream 24254 27322695 ~ 27322991 (-) True G1533462
TU1755453 lncRNA upstream 25841 27324282 ~ 27324554 (-) True G1533465
TU1755456 lncRNA upstream 28383 27326824 ~ 27327071 (-) True G1533468
TU1755430 lncRNA upstream 31816 27330257 ~ 27330524 (-) True G1533442
XM_036952444.1 mRNA downstream 5581 27258840 ~ 27292408 (-) False LOC110495938
XM_036952439.1 mRNA downstream 5582 27258840 ~ 27292407 (-) False LOC110495938
XM_036952445.1 mRNA downstream 5582 27258840 ~ 27292407 (-) False LOC110495938
XM_036952446.1 mRNA downstream 5582 27258840 ~ 27292407 (-) False LOC110495938
XM_036952443.1 mRNA downstream 5583 27257486 ~ 27292406 (-) False LOC110495938
XM_021571478.2 mRNA upstream 90268 27388709 ~ 27395340 (-) False LOC110495941
XM_021571479.2 mRNA upstream 90268 27388709 ~ 27395340 (-) True LOC110495941
XR_005037418.1 mRNA upstream 225418 27523859 ~ 27526447 (-) True LOC118941127
XM_021571487.2 mRNA upstream 275090 27573531 ~ 27607298 (-) False LOC110495945
XM_036952456.1 mRNA upstream 275090 27573531 ~ 27607298 (-) False LOC110495945
TU1755360 other downstream 108440 27187622 ~ 27189549 (-) True G1533378
TU1755359 other downstream 109759 27187622 ~ 27188230 (-) False G1533378
TU1753025 other downstream 1589115 25696539 ~ 25708874 (-) True G1531236
TU1752958 other downstream 1724318 25573438 ~ 25573671 (-) True LOC110495915
TU1752921 other downstream 1774809 25519421 ~ 25523180 (-) True G1531142
TU1755743 other upstream 455733 27754174 ~ 27798613 (-) True LOC110495948
TU1755806 other upstream 562605 27861046 ~ 27914520 (-) True LOC110496785
TU1755852 other upstream 736523 28034964 ~ 28036616 (-) False LOC110495955
TU1756202 other upstream 1052937 28351378 ~ 28352618 (-) True LOC110495963
TU1758870 other upstream 2985931 30284372 ~ 30284762 (-) True G1536703

Expression Profile