RNA id: TU1755005


Basic Information

Item Value
RNA id TU1755005
length 2561
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G1533060
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27985471 ~ 27988152 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAAGAGTCAagcattttattattattttttacagatTTCTACACATTGTTTACAAAATGTAAGGATATTGTGCTTCAAAATCTAAGTCTGATTTGAAAAATGTTTAATTTAGATGTTTTCAGCAATTCAACAAAAGCCAAACTTCATGAGTTAATGTCCTAGGGACCACAGTGCCTCCTGGCTTTGTAAGAAAGGTGTCAATGTAAAACCAAGTCATATGTACAAATATCAAATTCCCTAGCAAGAACCTTCTATCTTGAGTAGAAGAATATGAGAAGAGCCAACTGTTTTTCAGGGATGAGAGACTGAAATAGTATTACCAGAATTTACATACCCATTCAACTAAATCTATGGAGAAAGAAGACATTTTCCAATTTTGAGCGGGTGGAGAAGACAAATTATATGCGAGTGATTGAGTGGTTTTTAATGTTGTCAGGTCTCCCCAACCAAATTGGTATGTTAAAGAGGGATACTAATTAATTGCATAAATTTAAAAAAACGACATTTCTACTTAAAAAAAGTGATGTTTTGCACAATACAACTGTTTCCATGGAAAGGGTAATTGGATGAAAATCGCATTCATTAGATACATTTTCAATCATATTCAAAACTCTTATTTAAAAAACATCAAAACAGTAAACTGGTTATGACCTATTTCAGTTGCGTGGCATTCTGTTGTACAAACATTAAATTAGAGATAGCCACTGCATTCTATCATGGTAAAATAAATAGTTAAGAGTTCCATCTGTCCCCCAGTGCTATCTGAGTttagggtcatgttcagtaggcagGAAATGAAACAAATGTCcccaaaaagggggggggggggggggctctctgaccttgtccaataagaaacttcTATTTTCGTTTGCTATTGCGAAGTGGTGTAAAGCATTTCGCTAtgatgtgccctaatgaacacgacttGAGGGGCAGCCAAACCGAGATATGAATTGAATGTTTACTGTTTTTTCACTGGAATAAAAAAGCATTACATCTCTACTATTGTTCAGTGCAGGGACCAGTAGCCATCTGTGCAAAAATATgttgacatttttttaaaataactACAGTAAATGAGAGAATAATGACCCAAAAACTCCATGGCAAATCAAATGTAGGCTAGTTGTCTCTAGCTTGAGTGcaagtctgtttgtgccatcaatCCAACTCCTTCCCACTCATTGTCATGCAATGTTTGGCTTGACAAGGACAGCAAtagagttggcaagagcacaaacagatctgggaccaggctaaattGCCTCCCTTCTTAAAgcgctacagtacagtactgactTGTGGAGACTTTCTCGACTTTCTTACTTTCTCAACACATTCTCAAATAGCTATGATGTCACATCAAAACTTAACTCTTCCAACTAAAAACTTGACTTAGCCCAACTCCCACAAGCCCCCATTTTCAAGCATAGGTAAAGAGTaggtagcctggGTAGTAACAAACGCTGTGTGGGTATGGTAGCCATGCATAGACatatttttgtgtatttttttaaaccaaacAAGAAAGATTAGTTTGCCATGTACACACCTTCTAGACCTCAAACACCTCCTTGACTTTGGAAACACCCATTGTAAAGCGCTGTGATCCAACCTCCTTTGAAAAATCTACGTTAGAAAAGATACGAGGGTCTGAGCACAGAACTCAGATCTCACGCTGTTATGAGTTCATCTCACTTATTTACACCAATTCAGCTGGCAAACCACTGTACAAAATGTGCTACTCACCTTTAGGGGGCCTTATCTCAAATGTAGACAGTATATGCAACAAAACAATGCACATACAAAACAAAATCAATCCTTTCACTGCAACGGACGCATTCTGAAAAATCGGTTGGTTTAATTTGGAGTCCGGCGTCATAGTCATTGCAGGGTAACGATTGTGGCTTGTTTTGTCCGTCTGTGTCTAGCTGGGCATGAGGAGAGATTGGGCTTTCTCGATGGGCAGCATGAATTGTGGGCAGCAGGGTCCGACACGGAGGGTTGCCATGCCAGTCAGACGGGAGTCCAGGAGCATTGGGATGGCTCCGtagaggagggggacaggggCCAGCCACGGTGCTGAGGGGTGACCAGGGGTTCCAGGCTCAAGTAGTGGAGCAGAGGTGTTCGATGGGCCGCACTGGATGGAGCCAAGAGGGAGGCTCCCCACTGTAACTGGGCAGCCGGGGTAGTGCAGAGAGGAGGCGGACAAGGCTGGTTCAGTGTCAGGCTGGGGGTGTGGGTCAGTGTGGCTTAGGGAAGTGAGGAGAGAGCCCCATAGACACAGTATAGAGGTCTGGGAGGTGGTTGGCGAGCCGTGGTTGTCGTGGGTGTGGAGAATGCCAGGTCTGCGTTTGTGACTGTCGTTGCCCAAGACGCAGCAGCGAGGGAGGTCGGATGCTGGACTTGGGGTCTCTGGGACTGGGAGCAggcctagtggtggtggtggagagaggCTGGAGCTAGGCAGGTGGACTTGGCTGACTGGGGACAGGGGCTGGCTGCTCCTGGGGAGGCTGGTGGCGATAAGGCCCGCGACACTGGTCAGATACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1755076 lncRNA upstream 4189 27978117 ~ 27981282 (+) True G1533122
TU1755078 lncRNA upstream 4853 27979982 ~ 27980618 (+) True G1533123
TU1755007 lncRNA upstream 26664 27947078 ~ 27958807 (+) False LOC110495958
TU1755023 lncRNA upstream 41483 27943362 ~ 27943988 (+) False LOC110495958
TU1755054 lncRNA upstream 58386 27926292 ~ 27927085 (+) True si:dkey-1h24.6
TU1755011 lncRNA downstream 7350 27995502 ~ 28053987 (+) True G1533062
TU1755111 lncRNA downstream 40804 28028956 ~ 28033896 (+) True G1533155
TU1755024 lncRNA downstream 66945 28055097 ~ 28116203 (+) True G1533073
TU1755973 lncRNA downstream 155820 28143972 ~ 28144778 (+) False G1533948
TU1755974 lncRNA downstream 155820 28143972 ~ 28144623 (+) True G1533948
XM_021571508.2 mRNA upstream 38294 27943373 ~ 27947177 (+) False LOC110495958
LOC118941047 mRNA upstream 44673 27938032 ~ 27940798 (+) True LOC118941047
XM_021571503.2 mRNA upstream 54133 27925782 ~ 27931338 (+) False si:dkey-1h24.6
XR_002469493.2 mRNA upstream 153566 27829955 ~ 27831905 (+) False LOC110495952
XM_021571497.2 mRNA upstream 156129 27820568 ~ 27829342 (+) True alg11
LOC110496786 mRNA downstream 486197 28474349 ~ 28479668 (+) True LOC110496786
XM_021571522.2 mRNA downstream 533328 28521480 ~ 28595208 (+) False LOC110495966
XM_036952472.1 mRNA downstream 536958 28525110 ~ 28582719 (+) False LOC110495966
XM_021571527.2 mRNA downstream 536958 28525110 ~ 28592183 (+) False LOC110495966
XM_021571534.2 mRNA downstream 536958 28525110 ~ 28592183 (+) False LOC110495966
TU1755008 other upstream 35249 27947078 ~ 27950222 (+) True LOC110495958
TU1754835 other upstream 333646 27636540 ~ 27651825 (+) True LOC110495947
TU1754169 other upstream 1227794 26757369 ~ 26757677 (+) True G1532307
TU1753187 other upstream 2041793 25934180 ~ 25943678 (+) True LOC110496782
TU1753186 other upstream 2050513 25934180 ~ 25934958 (+) False LOC110496782
TU1756511 other downstream 744623 28732775 ~ 28735228 (+) False LOC110495972
TU1756512 other downstream 744623 28732775 ~ 28734991 (+) True LOC110495972
TU1756570 other downstream 815876 28804028 ~ 28804673 (+) True G1534488
TU1756577 other downstream 824677 28812829 ~ 28813103 (+) True G1534495
TU1758887 other downstream 2308979 30297131 ~ 30297346 (+) True G1536720

Expression Profile