RNA id: TU1756381


Basic Information

Item Value
RNA id TU1756381
length 1331
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1534330
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 28595646 ~ 28597306 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCATGCTCAGTTGtacactggggcctcccactcctctttctattctggttagagacagtttgtgctgttctgtgaagggagtagtacacagcgttgtacgagatcttcagtttcttggaaatttctcacatgtaatagccttcatttctcagaacaggaatagactgacgagtttcagaagaaggtctttgtttctggcaattttgagcctgtaatcgaacccacaaatgctgatgctccagatacacaacaagtctaaagaaggccagttgtattgcttctttaatcagaacaacagttttcagctgtgctaatataattgcaaaagggttttctaatgatcaattagcctttaaaattataaacttggattagctaacaacgtgccattggaacacatgtTCCAtgtatgtaataatgtaatatgcctatgtagatattccataaaaagaagtcatttacaacaatgtctacactgtatttctgatcaattttatgttattttaatggacaaaaaaatgtgtttttctttcaaaaacaaggacatttctaagaccccaaacttttgaactgttgtgtgtgtgtgtatgtacatatatatatataacgctAAAAACTTTACTATTTTTATTCATACACAAATTATATATCGTTTTAAGTTTAGTATTTTTGGGCGTTTTTAAAAGGTGAGGTCAAAAGGATCAACTGCTGTACAGAAAGCAGTCGTGTCCTAAGCCCCATTTAGAATACTTTAATAACACACCCTTCCTTACTTACTGATCTAACACAATTTGTTAAATTTAAGCAACAGTTCTATCATATGGCTTTCTCTAATCCAGCCATGGCAGATTAGGTATTTCTTCAAGGAAGGGGGAAAGCAATGATGCATTTTGTTAAAGTATTGGAACAGGGCCCTATTCTGTCCTTGTAGAGAGCTTGACGATGAGGGTTGTGGCCGTCATGCTATGCTGAATGGTCCCTAAAAGGACTTCAGCCAGGGTCGTATTCACAAGGAAGCAAATGTGCTGAAACGGGAAGGGGCtaactgaacttgtccaataagaaacgcttgtttttgtttaatgttgcaaaacgtttcgcTACGGTGTTCACTATTGAATATTACCCAGGTAATGAATTGAGACTGCTTTGTCATCAGAAATGCAGTATCCCATCTactttacaaaaaatatatatagagaaaAAGACAAGACTCATTGGTTTATTAGTTTTGATGTAACCATTTTTCTGTTTTCTTTGTGAGTATAGTTTGTGCTATTTTATGTTACAGCAAGATAGTGTAAAATCTAttgaaataaagaaagaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1756394 lncRNA upstream 80017 28512018 ~ 28515959 (+) True G1534339
TU1756237 lncRNA upstream 209682 28386030 ~ 28386294 (+) True G1534194
TU1756216 lncRNA upstream 225527 28369831 ~ 28370449 (+) True G1534173
TU1756082 lncRNA upstream 325457 28263711 ~ 28270519 (+) True G1534045
TU1755974 lncRNA upstream 451353 28143972 ~ 28144623 (+) True G1533948
TU1756436 lncRNA downstream 13622 28610928 ~ 28611162 (+) True G1534380
TU1756442 lncRNA downstream 18976 28616282 ~ 28616493 (+) True G1534385
TU1756445 lncRNA downstream 20917 28618223 ~ 28618476 (+) True G1534388
TU1756449 lncRNA downstream 44800 28642106 ~ 28644214 (+) True LOC110496787
TU1756467 lncRNA downstream 71464 28668770 ~ 28672682 (+) True LOC110495968
XM_021571523.2 mRNA upstream 768 28525110 ~ 28595208 (+) False LOC110495966
LOC110496787 mRNA downstream 36505 28633811 ~ 28644096 (+) False LOC110496787
XM_021571538.2 mRNA downstream 49275 28646581 ~ 28672693 (+) False LOC110495968
XM_021571536.2 mRNA downstream 49276 28646582 ~ 28672693 (+) False LOC110495968
XR_002469497.2 mRNA downstream 135283 28732589 ~ 28735229 (+) False LOC110495972
XM_036952478.1 mRNA downstream 1584926 30182232 ~ 30186368 (+) True zgc:174945
TU1755074 other upstream 557500 27974813 ~ 28038476 (+) True G1533121
TU1755008 other upstream 645754 27947078 ~ 27950222 (+) True LOC110495958
TU1754835 other upstream 944151 27636540 ~ 27651825 (+) True LOC110495947
TU1754169 other upstream 1838299 26757369 ~ 26757677 (+) True G1532307
TU1753187 other upstream 2652298 25934180 ~ 25943678 (+) True LOC110496782
TU1756511 other downstream 135469 28732775 ~ 28735228 (+) False LOC110495972
TU1756512 other downstream 135469 28732775 ~ 28734991 (+) True LOC110495972
TU1756570 other downstream 206722 28804028 ~ 28804673 (+) True G1534488
TU1756577 other downstream 215523 28812829 ~ 28813103 (+) True G1534495
TU1758887 other downstream 1699825 30297131 ~ 30297346 (+) True G1536720

Expression Profile