RNA id: TU1756543


Basic Information

Item Value
RNA id TU1756543
length 3137
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G1534461
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 28771301 ~ 28774539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAATTCATCACGTTTTATTTCACATACCAGTTGTACAAACAATAAATTACAAGTTCAGTGCTGTGTTTCTGTCGTTCAACGAAAGGGTCTTTTCCCATGGGAAGTGTCAAACagtaatacatatacagtatgtgtgtgtgtgtctgtgtgtttgtatgcgtgtgGTTTAATTTTCTTTccatatttatgtgtgtgtgcaaaaTGTATTCTGTACATATGTGATATTGGTGTTTATATCTAAATGTGTAATTAAGTCATTTGGGGGTGTTGTGTATTCtttatgtgaatgtgtgtctgtgcctgtgtatGAGAAATGAGAAATAGGGAGTTGTGCCTATGTGGCAAGAGCCCATATGTATCCAGTATAATGCATGTCTATCATCACTCTTGAAAAGGTGTGTGGTATAGCATTACAAGCTCatgagggacagagggatgacGGAGAATGGATGGTAGTGGAtgtgagagtgagtgaaagagtgagtgTGAGAAATGGATAGCTTAAACAAGAATGTGTCAATATgttgaatgagagatggagagggtgagcgagtgagagagagatagagagaaagagcgagcgagcgagctgTAGAAGTGTATTTGGTCAGGTATGACTGGGATAGTTTCCCTCTTGCTGTATTTGCGAGTATCCAGTGCACACATTGTCATACTAGCAATCATTTCTTTTTttcctagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagagacatggagagcCAAAGAAACACAGTGACAAAATGGTAGCGACCCTCTAGCGCCCGCATAGTGATACAAATGGAACTGAGGGTTAAAGTCCATTAAAAGAGTTTAGGACACTGAATATGACAAAAACACTATATGTTTACACTTGTATgtttacaacacacacacacacacacacacacacacacaaatgtcaaGCTTAGCCCCACTCATTATGTAATCCCATAACATTACAACCTTTAACCTCCACAAAGGTCAGAGTTGAAGGGTCACCATGGTCTTTTGGCCCAGAGTCACTCTATAGGTGTCACTGGGCATTGGCAGTTGgcagtgctgagcgattagtgctttttgaggtcggttcggttTTTGTTCGATTATTAAAATatcaatatttaaaaaatatattaaatgcactatgcattatgtgggttgaatgctgaaacaacatttattcacattactttactttaataaaatatttcagttgtttatattacatttgtttaatTTTATGATTTTAATATTTAATTCCAAGTTAtttctatagagctgctgcctatgctgtctgacaaaatcagtATTTTAGTAGTTCTTAAAAGTAAAATAtgctgctgaataccaactatcaaccACTTAGATTATgcattttcaggtagagatacttcGCAAAGtaactgctctctatccctctcgatCGCACATTCTTCTGTactaacctaatgtagcaggcataaaagaaagacacagaccggacaagtacGCACGCAATCGATTATGATCATTGTAGTTAATTAGCATGTTTTCTGCACTAAATTATTttgaatattggcctgttggaaactacaactccctacaactacatcgcacagttcgggATTCAGTTGATTTATTTCAAGAGAAACTGCCCAATGTACGCATTGACTtcacagaaaaaaaacataactaaatggaattcaaataattgaaacGAAGtctgtcaattagttgtttaaaaaccaaaataataaacacaatttaggttaatcgctcagcactagctGTTGGGCACAGCTCTGCCCCAACTCACTCCATCACTGTGTGTCCATTTTCTGACCTGGGATGTTTGCAGTGCGGTTCAACCCCATTTCTGGACTGGTTACAGTAAGGATTGGTCGCTCTTGCTTGTGCCCCCAGCCTACTTCCTGGTCCGCAATCCAAACAGGAAGTTGGATAGACCAATCGTATGTGGAGAATCGGCCGTGGGAGGAGCGAGAAGAAAAAGGGGACCCCGAAGGGAAGTGGAGAAAAAGTACCACGCAACAGACTAGTACGGAGGCCCATTGTCCAGAGGTGTGCAGTCACACAAGACAAAGAGACAAAGCGGACAATCATGAAAAACCCACAGTAGCAAGAACATACAGAAAAGCAAACAAAATGTGTCATTAACAGAGGAATACAAACGAAACCTTCAGATAGAGGAGGGATTTGGCAAGTGGGTGGTTGTTGATTGGGGCGGCTGCACTATTCGGAAGTGTCCACATGTATCTGTCGTATGTCTGTAGCTATGCCAAGCAGGGCCTGGCATAGTAGGTGTGGGGGTAAGGAAGAGGAGGGGTTGACTGTCAATAACCAATGTCTGTGTGTAGCCCCTACTTTCAGGGGAGTCTAGTTTCTGGTCCTTTCAACACTTTTTCACTAGGCATTGTTTGAAGGCGGAGGGGCGGTCGCCCAGAGGGCAACCCTTGGCCAGCTTGGCCTGCGGGTCCTTGCACTGCACCGTGCGGCTCTGCCAGCCCGTGTCACAAGTCCTGGAGCAGATCATCCAGGGGCCAGTCACCCACTGGGGCCCAGAGGCCGCCGTCGACACCCCTGGGGCTGTAGAGAGAGCCATGGCTGAAAACGGGGCCGATGTGGTTCTACTGCTTGATCTTGTAGAggtggttgttgtagtagtagtggtggatgtggttgtggaggtgTGCAGGGGAGGTGGCGGTGGTGGAGCCAAAACCCGACGGGGCATGAAGAAGCTGTAGCGGATATCCAGGGGCCTCTTGGAGTCCGTGGCCAGAATCTGAACTGTAAGGGCCTCTCTGAGGGCCCCAGGGCCCATGCTGTGTAGCCACTCATCCCGCTGGCTCCAGCCACTGTAGTTGAGCACCGAACCGTTGAGGGGGATGACTGTCTCTGAGGTAGAGATCATGAACTTGCCGTTGAGGAGGTAGTCGCCACCGGGACGACGCAGGGCCAGGTAGGCTGTGTACCGGGGCTGATCCTTGGGCTTGTGCTGGCGGACCTTGATGTGGGTGGAGCCCTCTGGGATCTTCACAACGTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1756537 lncRNA upstream 2301 28768816 ~ 28769054 (+) True G1534458
TU1756535 lncRNA upstream 8586 28761592 ~ 28762769 (+) True G1534456
TU1756534 lncRNA upstream 9884 28760973 ~ 28761471 (+) True G1534455
TU1756471 lncRNA upstream 95320 28672838 ~ 28676035 (+) True G1534403
TU1756547 lncRNA downstream 3251 28777790 ~ 28778162 (+) True G1534465
TU1756548 lncRNA downstream 3761 28778300 ~ 28778591 (+) True G1534466
TU1756550 lncRNA downstream 5258 28779797 ~ 28781843 (+) True G1534468
TU1756558 lncRNA downstream 14310 28788849 ~ 28789147 (+) True G1534476
TU1756559 lncRNA downstream 14996 28789535 ~ 28789805 (+) True G1534477
XR_002469497.2 mRNA upstream 36126 28732589 ~ 28735229 (+) False LOC110495972
XM_021571538.2 mRNA upstream 98662 28646581 ~ 28672693 (+) False LOC110495968
XM_021571536.2 mRNA upstream 98662 28646582 ~ 28672693 (+) False LOC110495968
LOC110496787 mRNA upstream 127259 28633811 ~ 28644096 (+) False LOC110496787
XM_021571533.2 mRNA upstream 179117 28525112 ~ 28592238 (+) True LOC110495966
XM_036952478.1 mRNA downstream 1407693 30182232 ~ 30186368 (+) True zgc:174945
XM_021571548.2 mRNA downstream 1459152 30233691 ~ 30254904 (+) False cckbra
XM_036951036.1 mRNA downstream 1744081 30518620 ~ 30519442 (+) True LOC118940974
LOC110496792 mRNA downstream 1760475 30535014 ~ 30539520 (+) True LOC110496792
XM_036952483.1 mRNA downstream 1952268 30726807 ~ 30749687 (+) False LOC110495985
TU1756511 other upstream 36127 28732775 ~ 28735228 (+) False LOC110495972
TU1756512 other upstream 36364 28732775 ~ 28734991 (+) True LOC110495972
TU1755074 other upstream 732879 27974813 ~ 28038476 (+) True G1533121
TU1755008 other upstream 821133 27947078 ~ 27950222 (+) True LOC110495958
TU1754835 other upstream 1119530 27636540 ~ 27651825 (+) True LOC110495947
TU1756570 other downstream 29489 28804028 ~ 28804673 (+) True G1534488
TU1756577 other downstream 38290 28812829 ~ 28813103 (+) True G1534495
TU1758887 other downstream 1522592 30297131 ~ 30297346 (+) True G1536720
TU1759494 other downstream 2047969 30822508 ~ 30828046 (+) True G1537251
TU1760344 other downstream 2794352 31568891 ~ 31572239 (+) True LOC110496006

Expression Profile