RNA id: TU1757167


Basic Information

Item Value
RNA id TU1757167
length 490
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1535047
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 29076211 ~ 29076700 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgcacacacatacactgtggTGCTGTCACCAGTCCAGAGAGACACTTCCACACCTTTGGCCTGGCTATGGTTGGAGAGGCCAGCCCGAGCCCAGTGCACTTTGTTGCTAAGCTTTTTTGTGCTTTTCTGCTGATatgcagtggggagaacaagttttTGAaatactgccgattttgcaggttttcctacttacaaagcatgtagaggtctgtaatttttatcataggtacacttcaactgtgagagacggaatctaaaacaaaaatccagaaaatcacattgtatgatttttaagtaattcatttgcattttattgcatgacataagtatttgatcacctaccaaccagtaagaattctggctctcacagacgtgttagtttttctttaagaagccctcctgttctccactcattacctgtattaattgcacctgtttgaactcgttacctgtatgatagacacctgtccacacactcaatcaaacagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1757161 lncRNA downstream 2385 29073429 ~ 29073826 (-) True G1535041
TU1757135 lncRNA downstream 18301 29057511 ~ 29057910 (-) True G1535015
TU1757006 lncRNA downstream 96852 28979128 ~ 28979359 (-) True G1534888
TU1756948 lncRNA downstream 154674 28921181 ~ 28921537 (-) True G1534830
TU1756938 lncRNA downstream 158564 28917124 ~ 28917647 (-) True G1534823
TU1757182 lncRNA upstream 9931 29086631 ~ 29086901 (-) True G1535062
TU1757277 lncRNA upstream 72782 29149482 ~ 29149682 (-) True G1535156
TU1757462 lncRNA upstream 196003 29272703 ~ 29273015 (-) True G1535335
TU1757966 lncRNA upstream 339825 29416525 ~ 29546496 (-) True LOC110495975
TU1758369 lncRNA upstream 826040 29902740 ~ 29902941 (-) True G1536211
XM_021571544.2 mRNA downstream 270856 28771350 ~ 28805355 (-) False LOC110495974
XM_021571543.2 mRNA downstream 308148 28760672 ~ 28768063 (-) False LOC110495973
XM_021571542.2 mRNA downstream 317526 28739018 ~ 28758685 (-) True LOC110495971
XM_036952476.1 mRNA downstream 344899 28689122 ~ 28731312 (-) False LOC110495970
LOC110496788 mRNA upstream 176827 29253527 ~ 29274733 (-) True LOC110496788
XM_021571545.2 mRNA upstream 337477 29414177 ~ 29841598 (-) False LOC110495975
XM_021571546.2 mRNA upstream 337477 29414177 ~ 29841599 (-) False LOC110495975
XM_021571547.2 mRNA upstream 337477 29414177 ~ 29841599 (-) False LOC110495975
XR_002469498.2 mRNA upstream 419593 29496293 ~ 29497472 (-) True LOC110495976
TU1756202 other downstream 723593 28351378 ~ 28352618 (-) True LOC110495963
TU1755852 other downstream 1039595 28034964 ~ 28036616 (-) False LOC110495955
TU1755806 other downstream 1161691 27861046 ~ 27914520 (-) True LOC110496785
TU1755743 other downstream 1277598 27754174 ~ 27798613 (-) True LOC110495948
TU1755360 other downstream 1886662 27187622 ~ 27189549 (-) True G1533378
TU1758870 other upstream 1207672 30284372 ~ 30284762 (-) True G1536703
TU1759222 other upstream 1443192 30519892 ~ 30525373 (-) True G1537022
TU1759310 other upstream 1526016 30602716 ~ 30603392 (-) True G1537091
TU1759986 other upstream 1835127 30911827 ~ 30914295 (-) False LOC110495992
TU1759987 other upstream 1837669 30914369 ~ 30953308 (-) True LOC110495992

Expression Profile