RNA id: TU1758700



Basic Information


Item Value
RNA id TU1758700
length 305
lncRNA type intronic
GC content 0.52
exon number 1
gene id G1536534
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30242561 ~ 30242865 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTCCAGGGGAGTCAGAGGAGTGTTGAGGtaggtgtataggagtttccatATGTGCCACatcggtggaaagtccagaccaggtttcgaCTGTGCACATCCactcagaatatgccgatttggctatcgccttctgtaagaagagggcgaccaaattaccacctcatcgacggggggattgcgcgataaacctccaggtaaactctacacttcccaggagtcacgtgtacccattgtcacaggagcagacgttggctatggagacatatgtcactgaatctctggggcaggggtacattcggccctcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1758692 lncRNA upstream 14875 30227210 ~ 30227686 (+) True G1536526
TU1758594 lncRNA upstream 166738 30075589 ~ 30075823 (+) True G1536434
TU1758505 lncRNA upstream 231377 30010950 ~ 30011184 (+) True G1536347
TU1758469 lncRNA upstream 267924 29974413 ~ 29974637 (+) True G1536311
TU1758462 lncRNA upstream 276920 29965337 ~ 29965641 (+) True G1536304
TU1758701 lncRNA downstream 1683 30244548 ~ 30244916 (+) True G1536535
TU1758704 lncRNA downstream 5231 30248096 ~ 30248325 (+) True G1536538
TU1758706 lncRNA downstream 8647 30251512 ~ 30251747 (+) True G1536540
TU1758707 lncRNA downstream 11408 30254273 ~ 30254498 (+) True cckbra
TU1758664 lncRNA downstream 19115 30261980 ~ 30262420 (+) True G1536498
XM_036952478.1 mRNA upstream 56193 30182232 ~ 30186368 (+) True zgc:174945
XR_002469497.2 mRNA upstream 1507332 28732589 ~ 28735229 (+) False LOC110495972
XM_021571538.2 mRNA upstream 1569868 28646581 ~ 28672693 (+) False LOC110495968
XM_021571536.2 mRNA upstream 1569868 28646582 ~ 28672693 (+) False LOC110495968
LOC110496787 mRNA upstream 1598465 28633811 ~ 28644096 (+) False LOC110496787
XM_036951036.1 mRNA downstream 275755 30518620 ~ 30519442 (+) True LOC118940974
LOC110496792 mRNA downstream 292149 30535014 ~ 30539520 (+) True LOC110496792
XM_036952483.1 mRNA downstream 483942 30726807 ~ 30749687 (+) False LOC110495985
XM_021571555.2 mRNA downstream 483993 30726858 ~ 30749687 (+) False LOC110495985
XM_021571556.2 mRNA downstream 483993 30726858 ~ 30749687 (+) False LOC110495985
TU1756577 other upstream 1429458 28812829 ~ 28813103 (+) True G1534495
TU1756570 other upstream 1437888 28804028 ~ 28804673 (+) True G1534488
TU1756511 other upstream 1507333 28732775 ~ 28735228 (+) False LOC110495972
TU1756512 other upstream 1507570 28732775 ~ 28734991 (+) True LOC110495972
TU1755074 other upstream 2204085 27974813 ~ 28038476 (+) True G1533121
TU1758887 other downstream 54266 30297131 ~ 30297346 (+) True G1536720
TU1759494 other downstream 579643 30822508 ~ 30828046 (+) True G1537251
TU1760344 other downstream 1326026 31568891 ~ 31572239 (+) True LOC110496006
TU1760346 other downstream 1335302 31578167 ~ 31580320 (+) True LOC110496008
TU1760548 other downstream 1510845 31753710 ~ 31754191 (+) True G1538208

Expression Profile