RNA id: TU1759282


Basic Information

Item Value
RNA id TU1759282
length 200
lncRNA type inter_gene
GC content 0.28
exon number 2
gene id G1537069
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30587250 ~ 30591430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaatctgaaaaaaatccgaaaaaatccgaaaaaaatcggaaaaaatcggaaaaaatcgggaaaaaaaatcggaaaaaaatcggaaaaaaatcggaaaaaatcggaaaaaaatcgggaaaaatagggaaaaaaattcggaaaaaatcggaaaaaaaatctggaaaaaatcggaaaaaaatcggaaaaaaaatcggaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1759273 lncRNA upstream 5558 30581868 ~ 30585331 (+) True G1537066
TU1759271 lncRNA upstream 13181 30573839 ~ 30577708 (+) True G1537064
TU1759266 lncRNA upstream 13396 30571478 ~ 30577493 (+) True G1537061
TU1759284 lncRNA downstream 3261 30594691 ~ 30595743 (+) False G1537070
TU1759285 lncRNA downstream 3261 30594691 ~ 30595069 (+) True G1537070
TU1759311 lncRNA downstream 12575 30604005 ~ 30604225 (+) True G1537092
TU1759312 lncRNA downstream 13296 30604726 ~ 30605036 (+) True G1537093
TU1759313 lncRNA downstream 14042 30605472 ~ 30605804 (+) True G1537094
LOC110496792 mRNA upstream 51369 30535014 ~ 30539520 (+) True LOC110496792
XM_036951036.1 mRNA upstream 71447 30518620 ~ 30519442 (+) True LOC118940974
XM_021571548.2 mRNA upstream 335985 30233691 ~ 30254904 (+) False cckbra
XM_036952478.1 mRNA upstream 404521 30182232 ~ 30186368 (+) True zgc:174945
XR_002469497.2 mRNA upstream 1855660 28732589 ~ 28735229 (+) False LOC110495972
XM_036952483.1 mRNA downstream 135377 30726807 ~ 30749687 (+) False LOC110495985
XM_021571555.2 mRNA downstream 135428 30726858 ~ 30749687 (+) False LOC110495985
XM_021571556.2 mRNA downstream 135428 30726858 ~ 30749687 (+) False LOC110495985
XM_021571557.2 mRNA downstream 135428 30726858 ~ 30749687 (+) False LOC110495985
XM_036952482.1 mRNA downstream 135428 30726858 ~ 30749687 (+) True LOC110495985
TU1758887 other upstream 293543 30297131 ~ 30297346 (+) True G1536720
TU1756577 other upstream 1777786 28812829 ~ 28813103 (+) True G1534495
TU1756570 other upstream 1786216 28804028 ~ 28804673 (+) True G1534488
TU1756511 other upstream 1855661 28732775 ~ 28735228 (+) False LOC110495972
TU1759494 other downstream 231078 30822508 ~ 30828046 (+) True G1537251
TU1760344 other downstream 977461 31568891 ~ 31572239 (+) True LOC110496006
TU1760346 other downstream 986737 31578167 ~ 31580320 (+) True LOC110496008
TU1760548 other downstream 1162280 31753710 ~ 31754191 (+) True G1538208
TU1762072 other downstream 2428798 33020228 ~ 33020544 (+) True G1539641

Expression Profile