RNA id: TU1759398


Basic Information

Item Value
RNA id TU1759398
length 821
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1537170
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30688846 ~ 30689666 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttaaaaattctagggacaattaggaggcctgcgtcttgtgaccgtagcgtacgtgtaggtatgtacggcaggaccaaatcagagagataggtaggagcaagcccatgtaatgctttgtaggttagcagtaaaaccttgaaatcagcccttgctttgacaggaagccagtgtagagaggctagcactggagtaatatgatcaaattttttggttctagtcaggattctagcagccgtatttagcactaactgaagtttatttagtgctttatccgggtagccggaaagtagagcattgcagtagtctaacctggaagtgacaaaagcatggatacatttttctgcatcatttttggacagaaagtttctgatttttgcaatgttacgtagatggaaaaaagctgtccttgaaatggtcttgatatgttcttcaaaagagagatcagggtccagagtaacgccgaggtccttcacagttttatttgagacgactgtacaaccattaagattaattgtcagattcaacagaagatctctttgtttcttgggacctagaacaagcatctctgttttgtccgagtttaaaagtagaaagtttgcagccatccacttccttatgtctgaaacacattcttctagcaagggcaattttggggcttcaccatgtttaattgaaatgtacagctgtgtgtcatccgcatagcagtgaaagttaacattatattttcgaatgacatccccaagaggtaaaatatatagtgaaaacaatagtggtcctaaaacggaaccttgaggaacaccgaaatttacagttgatttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1759362 lncRNA downstream 48413 30639975 ~ 30640433 (-) True G1537140
TU1759296 lncRNA downstream 90669 30576856 ~ 30598177 (-) True G1537077
TU1759301 lncRNA downstream 95723 30588248 ~ 30593123 (-) True G1537082
TU1759298 lncRNA downstream 105675 30580980 ~ 30583171 (-) True G1537079
TU1759295 lncRNA downstream 109021 30573850 ~ 30579825 (-) True G1537076
TU1759400 lncRNA upstream 628 30690294 ~ 30690881 (-) True G1537172
TU1759422 lncRNA upstream 14294 30703960 ~ 30704314 (-) True G1537194
TU1759907 lncRNA upstream 31737 30721403 ~ 30721673 (-) True G1537631
TU1759893 lncRNA upstream 95271 30784937 ~ 30786210 (-) True G1537617
TU1759974 lncRNA upstream 202102 30891768 ~ 30892048 (-) True G1537686
XM_036952481.1 mRNA downstream 14297 30661601 ~ 30674549 (-) True LOC110496794
XM_036951037.1 mRNA downstream 39734 30644510 ~ 30649112 (-) True LOC110496793
XM_021571553.2 mRNA downstream 50986 30620730 ~ 30637860 (-) True hcn3
XM_021571552.2 mRNA downstream 76188 30606694 ~ 30612658 (-) True ndufv1
XM_036952480.1 mRNA downstream 186666 30498183 ~ 30502180 (-) True LOC110515180
XM_021571576.2 mRNA upstream 98445 30788111 ~ 30802586 (-) False LOC110495990
XM_021571577.2 mRNA upstream 98445 30788111 ~ 30802586 (-) True LOC110495990
XM_021571571.2 mRNA upstream 113517 30803183 ~ 30882954 (-) False ubap2l
XM_021571563.2 mRNA upstream 113517 30803183 ~ 30890926 (-) False ubap2l
XM_021571564.2 mRNA upstream 113517 30803183 ~ 30890926 (-) False ubap2l
TU1759310 other downstream 85454 30602716 ~ 30603392 (-) True G1537091
TU1759222 other downstream 163473 30519892 ~ 30525373 (-) True G1537022
TU1758870 other downstream 404084 30284372 ~ 30284762 (-) True G1536703
TU1756202 other downstream 2336228 28351378 ~ 28352618 (-) True LOC110495963
TU1755852 other downstream 2652230 28034964 ~ 28036616 (-) False LOC110495955
TU1759986 other upstream 222161 30911827 ~ 30914295 (-) False LOC110495992
TU1759987 other upstream 224703 30914369 ~ 30953308 (-) True LOC110495992
TU1760029 other upstream 322212 31011878 ~ 31014176 (-) True LOC110495994
TU1760774 other upstream 826445 31516111 ~ 31523456 (-) True LOC110496004
TU1760868 other upstream 996086 31685752 ~ 31692671 (-) True LOC100136047

Expression Profile