RNA id: TU1759400


Basic Information

Item Value
RNA id TU1759400
length 588
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G1537172
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30690294 ~ 30690881 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aattcattttatatagcccttcgtacatcggctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggcggctaggaaaaactccctagaaaggccaaaacctaggaagaaacctagagaggaaccaggctatgtggggtggccagtcctcttctggctgtgccgggtggagattataacaaaacatggtcaagatgttcaaatgttcataaatgaccagcatggtcgaataataataaggcagaatagttgaaactggagcagcagcacagtcaggtggactggggacagcaaggagtcatcatgtcaggtattcctggggcatggtcctatggctcaggtcagttgaaactggagcagcagcacagccaggtggactggggacagcaaggagtcatcatgtcaggtagtcctggggcatggtcctagggctcaggtcctccgagagagagaaagagagaaggagagaattagagaacgcacacttagattcacacaggacaccgaataggacaggagaagtactccagatataacaaactgaccctat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1759398 lncRNA downstream 628 30688846 ~ 30689666 (-) True G1537170
TU1759362 lncRNA downstream 49861 30639975 ~ 30640433 (-) True G1537140
TU1759296 lncRNA downstream 92117 30576856 ~ 30598177 (-) True G1537077
TU1759301 lncRNA downstream 97171 30588248 ~ 30593123 (-) True G1537082
TU1759298 lncRNA downstream 107123 30580980 ~ 30583171 (-) True G1537079
TU1759422 lncRNA upstream 13079 30703960 ~ 30704314 (-) True G1537194
TU1759907 lncRNA upstream 30522 30721403 ~ 30721673 (-) True G1537631
TU1759893 lncRNA upstream 94056 30784937 ~ 30786210 (-) True G1537617
TU1759974 lncRNA upstream 200887 30891768 ~ 30892048 (-) True G1537686
TU1759988 lncRNA upstream 214679 30905560 ~ 30905854 (-) True G1537700
XM_036952481.1 mRNA downstream 15745 30661601 ~ 30674549 (-) True LOC110496794
XM_036951037.1 mRNA downstream 41182 30644510 ~ 30649112 (-) True LOC110496793
XM_021571553.2 mRNA downstream 52434 30620730 ~ 30637860 (-) True hcn3
XM_021571552.2 mRNA downstream 77636 30606694 ~ 30612658 (-) True ndufv1
XM_036952480.1 mRNA downstream 188114 30498183 ~ 30502180 (-) True LOC110515180
XM_021571576.2 mRNA upstream 97230 30788111 ~ 30802586 (-) False LOC110495990
XM_021571577.2 mRNA upstream 97230 30788111 ~ 30802586 (-) True LOC110495990
XM_021571571.2 mRNA upstream 112302 30803183 ~ 30882954 (-) False ubap2l
XM_021571563.2 mRNA upstream 112302 30803183 ~ 30890926 (-) False ubap2l
XM_021571564.2 mRNA upstream 112302 30803183 ~ 30890926 (-) False ubap2l
TU1759310 other downstream 86902 30602716 ~ 30603392 (-) True G1537091
TU1759222 other downstream 164921 30519892 ~ 30525373 (-) True G1537022
TU1758870 other downstream 405532 30284372 ~ 30284762 (-) True G1536703
TU1756202 other downstream 2337676 28351378 ~ 28352618 (-) True LOC110495963
TU1755852 other downstream 2653678 28034964 ~ 28036616 (-) False LOC110495955
TU1759986 other upstream 220946 30911827 ~ 30914295 (-) False LOC110495992
TU1759987 other upstream 223488 30914369 ~ 30953308 (-) True LOC110495992
TU1760029 other upstream 320997 31011878 ~ 31014176 (-) True LOC110495994
TU1760774 other upstream 825230 31516111 ~ 31523456 (-) True LOC110496004
TU1760868 other upstream 994871 31685752 ~ 31692671 (-) True LOC100136047

Expression Profile