RNA id: TU1759638



Basic Information


Item Value
RNA id TU1759638
length 218
lncRNA type intronic
GC content 0.44
exon number 1
gene id G1537368
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31030455 ~ 31030672 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCGGCCTTCAACTTGAGGTACTCAATTAGAAGACGCAGTACTGAGATAGCCTGCAATGGCACTTCCTGGAGTAGGTCAAACTGTGCACGTTATCTTTCCATGAGACGCCATCTTAACCGACTTCATTTGGCTTCAATACactattgagtcttcacataggaatgaatggtgtcacatgaccgatggctttgtccattcatatatacagtcaACGAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1759637 lncRNA upstream 514 31029734 ~ 31029941 (+) True G1537367
TU1759636 lncRNA upstream 772 31029478 ~ 31029683 (+) True G1537366
TU1759634 lncRNA upstream 4245 31026008 ~ 31026210 (+) True G1537364
TU1759561 lncRNA upstream 64707 30955106 ~ 30965748 (+) True G1537314
TU1759516 lncRNA upstream 173810 30855049 ~ 30856645 (+) True G1537273
TU1759629 lncRNA downstream 1462 31032134 ~ 31033712 (+) True LOC110495995
TU1759649 lncRNA downstream 13661 31044333 ~ 31044561 (+) True G1537379
TU1759650 lncRNA downstream 14053 31044725 ~ 31045155 (+) True G1537380
TU1759652 lncRNA downstream 17958 31048630 ~ 31049824 (+) True G1537382
TU1759653 lncRNA downstream 19253 31049925 ~ 31050225 (+) True G1537383
XM_021571579.2 mRNA upstream 121931 30904024 ~ 30908524 (+) False LOC110495991
XM_021571580.2 mRNA upstream 121931 30904063 ~ 30908524 (+) True LOC110495991
XM_021571558.2 mRNA upstream 253597 30767138 ~ 30776858 (+) False znf687b
XM_036952488.1 mRNA downstream 86242 31116914 ~ 31126108 (+) False LOC110496000
XM_021571603.2 mRNA downstream 86248 31116920 ~ 31126108 (+) False LOC110496000
XM_021571604.2 mRNA downstream 86259 31116931 ~ 31126108 (+) False LOC110496000
XM_036952489.1 mRNA downstream 86259 31116931 ~ 31126108 (+) False LOC110496000
XM_021571602.2 mRNA downstream 86275 31116947 ~ 31126108 (+) False LOC110496000
TU1759494 other upstream 202409 30822508 ~ 30828046 (+) True G1537251
TU1758887 other upstream 733109 30297131 ~ 30297346 (+) True G1536720
TU1756577 other upstream 2217352 28812829 ~ 28813103 (+) True G1534495
TU1756570 other upstream 2225782 28804028 ~ 28804673 (+) True G1534488
TU1756512 other upstream 2295464 28732775 ~ 28734991 (+) True LOC110495972
TU1760344 other downstream 538219 31568891 ~ 31572239 (+) True LOC110496006
TU1760346 other downstream 547495 31578167 ~ 31580320 (+) True LOC110496008
TU1760548 other downstream 723038 31753710 ~ 31754191 (+) True G1538208
TU1762072 other downstream 1989556 33020228 ~ 33020544 (+) True G1539641
TU1762103 other downstream 2028318 33058990 ~ 33059857 (+) True G1539671

Expression Profile