RNA id: TU1760047


Basic Information

Item Value
RNA id TU1760047
length 517
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1537751
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31037052 ~ 31037568 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcttgctttctctctctcggaggacctgagccctaggaccatgcctcaggactacctggcctgatgactccttgctgtccccagtccacctggtcgttcctctgctccagtttcaactgttctgcctgcagttatggaaccctgacctgttcaccggatgtgctacctgtcccagacctgctgttttcaactctctggagacagcaggagtggtagagatactctgaatgattggctatgaaaagccaactgacatttactcctgaggtgctgacctgttgcaccctctacaaccactgtgattattattatttgaccctgctggtcatctatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggattggccacccctcatagcctggttcctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1760044 lncRNA downstream 3330 31031450 ~ 31033722 (-) True G1537748
TU1760043 lncRNA downstream 5842 31030794 ~ 31031210 (-) True G1537747
TU1760040 lncRNA downstream 7900 31028904 ~ 31029152 (-) True G1537745
TU1760038 lncRNA downstream 8424 31028373 ~ 31028628 (-) False G1537745
TU1760037 lncRNA downstream 10187 31026633 ~ 31026865 (-) True G1537744
TU1760055 lncRNA upstream 6869 31044437 ~ 31044713 (-) True G1537759
TU1760028 lncRNA upstream 18492 31056060 ~ 31057140 (-) True G1537737
TU1760123 lncRNA upstream 160084 31197652 ~ 31252779 (-) True G1537824
TU1760144 lncRNA upstream 188685 31226253 ~ 31230295 (-) True G1537844
TU1760237 lncRNA upstream 318635 31356203 ~ 31358722 (-) True G1537931
XM_021571594.2 mRNA downstream 22851 31008756 ~ 31014201 (-) False LOC110495994
XM_021571595.2 mRNA downstream 22851 31008756 ~ 31014201 (-) False LOC110495994
XM_021571592.2 mRNA downstream 31196 30959174 ~ 31005856 (-) False cgnb
XM_021571593.2 mRNA downstream 31196 30959174 ~ 31005856 (-) True cgnb
XM_036952486.1 mRNA downstream 31208 30959174 ~ 31005844 (-) False cgnb
XM_021572935.2 mRNA upstream 11022 31048590 ~ 31051663 (-) True LOC110496925
XM_021571598.2 mRNA upstream 21453 31059021 ~ 31075756 (-) True LOC110495997
LOC110495999 mRNA upstream 39608 31077176 ~ 31085443 (-) True LOC110495999
XM_021571599.2 mRNA upstream 53087 31090655 ~ 31096283 (-) True LOC110495998
LOC110496926 mRNA upstream 421269 31458837 ~ 31459087 (-) True LOC110496926
TU1760029 other downstream 22876 31011878 ~ 31014176 (-) True LOC110495994
TU1759987 other downstream 83744 30914369 ~ 30953308 (-) True LOC110495992
TU1759986 other downstream 122757 30911827 ~ 30914295 (-) False LOC110495992
TU1759310 other downstream 433660 30602716 ~ 30603392 (-) True G1537091
TU1759222 other downstream 511679 30519892 ~ 30525373 (-) True G1537022
TU1760774 other upstream 478543 31516111 ~ 31523456 (-) True LOC110496004
TU1760868 other upstream 648184 31685752 ~ 31692671 (-) True LOC100136047
TU1760970 other upstream 676938 31714506 ~ 31715181 (-) True G1538595
TU1761118 other upstream 1019743 32057311 ~ 32058785 (-) True atp5if1a
TU1761767 other upstream 1524158 32561726 ~ 32562120 (-) True G1539348

Expression Profile