RNA id: TU1760055


Basic Information

Item Value
RNA id TU1760055
length 277
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1537759
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31044437 ~ 31044713 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctgtattgaacacagatcatcccgtcttcaattttaacgattatttacgtaaaaaaaagacctaaagttgtattagaaAAGTAgtctgaaatgttttggcaagattacaggtaacttttgagatattttgtagtcacgttgcgcaagttggaaccggtggttttctggatcaaacgcgccaaataaatggacattttggatatatcaacggaattaatcgaacaaaaggaccatttgtgatgtttatgggacatattggagtgccaacaaaagaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1760047 lncRNA downstream 6869 31037052 ~ 31037568 (-) True G1537751
TU1760044 lncRNA downstream 10715 31031450 ~ 31033722 (-) True G1537748
TU1760043 lncRNA downstream 13227 31030794 ~ 31031210 (-) True G1537747
TU1760040 lncRNA downstream 15285 31028904 ~ 31029152 (-) True G1537745
TU1760038 lncRNA downstream 15809 31028373 ~ 31028628 (-) False G1537745
TU1760028 lncRNA upstream 11347 31056060 ~ 31057140 (-) True G1537737
TU1760123 lncRNA upstream 152939 31197652 ~ 31252779 (-) True G1537824
TU1760144 lncRNA upstream 181540 31226253 ~ 31230295 (-) True G1537844
TU1760237 lncRNA upstream 311490 31356203 ~ 31358722 (-) True G1537931
TU1760262 lncRNA upstream 342286 31386999 ~ 31387202 (-) True G1537956
XM_021571594.2 mRNA downstream 30236 31008756 ~ 31014201 (-) False LOC110495994
XM_021571595.2 mRNA downstream 30236 31008756 ~ 31014201 (-) False LOC110495994
XM_021571592.2 mRNA downstream 38581 30959174 ~ 31005856 (-) False cgnb
XM_021571593.2 mRNA downstream 38581 30959174 ~ 31005856 (-) True cgnb
XM_036952486.1 mRNA downstream 38593 30959174 ~ 31005844 (-) False cgnb
XM_021572935.2 mRNA upstream 3877 31048590 ~ 31051663 (-) True LOC110496925
XM_021571598.2 mRNA upstream 14308 31059021 ~ 31075756 (-) True LOC110495997
LOC110495999 mRNA upstream 32463 31077176 ~ 31085443 (-) True LOC110495999
XM_021571599.2 mRNA upstream 45942 31090655 ~ 31096283 (-) True LOC110495998
LOC110496926 mRNA upstream 414124 31458837 ~ 31459087 (-) True LOC110496926
TU1760029 other downstream 30261 31011878 ~ 31014176 (-) True LOC110495994
TU1759987 other downstream 91129 30914369 ~ 30953308 (-) True LOC110495992
TU1759986 other downstream 130142 30911827 ~ 30914295 (-) False LOC110495992
TU1759310 other downstream 441045 30602716 ~ 30603392 (-) True G1537091
TU1759222 other downstream 519064 30519892 ~ 30525373 (-) True G1537022
TU1760774 other upstream 471398 31516111 ~ 31523456 (-) True LOC110496004
TU1760868 other upstream 641039 31685752 ~ 31692671 (-) True LOC100136047
TU1760970 other upstream 669793 31714506 ~ 31715181 (-) True G1538595
TU1761118 other upstream 1012598 32057311 ~ 32058785 (-) True atp5if1a
TU1761767 other upstream 1517013 32561726 ~ 32562120 (-) True G1539348

Expression Profile