RNA id: TU1760777


Basic Information

Item Value
RNA id TU1760777
length 264
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1538412
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31449411 ~ 31449674 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttattgtccccagcacaagatgtaatgtgtaatgatcgtgctgtttaatcagcttcttgatatgccacatctgtcaggtggatggattatcttgacaaaggataaaatgctcactaacaaggatgcaaacaaatgtgtgcaaaaaatttgagagaaataatgtttttgttcgtatggaaaatttctgggaacttttatttcagctcatgaaacatgggaccagcacttaccatgttgcattcatatttttgttcagtgtacaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1760310 lncRNA downstream 21806 31427336 ~ 31427605 (-) True G1538004
TU1760306 lncRNA downstream 26019 31423178 ~ 31423392 (-) True G1538000
TU1760304 lncRNA downstream 26337 31422846 ~ 31423074 (-) True G1537998
TU1760262 lncRNA downstream 62209 31386999 ~ 31387202 (-) True G1537956
TU1760237 lncRNA downstream 90689 31356203 ~ 31358722 (-) True G1537931
TU1760781 lncRNA upstream 4961 31454635 ~ 31454963 (-) True G1538416
TU1760782 lncRNA upstream 5301 31454975 ~ 31455445 (-) True G1538417
TU1760788 lncRNA upstream 10712 31460386 ~ 31460585 (-) True G1538423
TU1760827 lncRNA upstream 76658 31526332 ~ 31526533 (-) True G1538459
TU1760830 lncRNA upstream 86059 31535733 ~ 31551223 (-) False G1538462
XM_021571599.2 mRNA downstream 353128 31090655 ~ 31096283 (-) True LOC110495998
LOC110495999 mRNA downstream 363968 31077176 ~ 31085443 (-) True LOC110495999
XM_021571598.2 mRNA downstream 373655 31059021 ~ 31075756 (-) True LOC110495997
XM_021572935.2 mRNA downstream 397748 31048590 ~ 31051663 (-) True LOC110496925
XM_021571595.2 mRNA downstream 435210 31008756 ~ 31014201 (-) False LOC110495994
LOC110496926 mRNA upstream 9163 31458837 ~ 31459087 (-) True LOC110496926
XM_021571610.2 mRNA upstream 43178 31492852 ~ 31523680 (-) False LOC110496004
XM_021571611.2 mRNA upstream 43178 31492852 ~ 31524883 (-) False LOC110496004
XM_021571612.2 mRNA upstream 43178 31492852 ~ 31524883 (-) False LOC110496004
XM_021571613.2 mRNA upstream 54967 31504641 ~ 31523795 (-) False LOC110496004
TU1760029 other downstream 435235 31011878 ~ 31014176 (-) True LOC110495994
TU1759987 other downstream 496103 30914369 ~ 30953308 (-) True LOC110495992
TU1759986 other downstream 535116 30911827 ~ 30914295 (-) False LOC110495992
TU1759310 other downstream 846019 30602716 ~ 30603392 (-) True G1537091
TU1759222 other downstream 924038 30519892 ~ 30525373 (-) True G1537022
TU1760774 other upstream 66437 31516111 ~ 31523456 (-) True LOC110496004
TU1760868 other upstream 236078 31685752 ~ 31692671 (-) True LOC100136047
TU1760970 other upstream 264832 31714506 ~ 31715181 (-) True G1538595
TU1761118 other upstream 607637 32057311 ~ 32058785 (-) True atp5if1a
TU1761767 other upstream 1112052 32561726 ~ 32562120 (-) True G1539348

Expression Profile