RNA id: TU1760858


Basic Information

Item Value
RNA id TU1760858
length 471
lncRNA type antisense_over
GC content 0.49
exon number 3
gene id G1538487
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31568953 ~ 31571449 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttggtctttgtgttTAATGGACAGTGTGACAATTACAAACGTGAAAATTAGAACCCTTCTCTACTCAGCACCccattccttctctcctcttttcatcCCTCACTTCCCCATCTTCTTCTTGTGCATCTGGTAGCACTGTTCACAGGCGATGGACAGGCCCACAACTAGAGAAACAAACTCCTCAAAGTTCACCTCTCCATCACCATTAGAGTCCAGATCCTTCATTATCTTGTCTACTGTGGCTGGGTCCTTCTGAGACTGAAATGAAGACTTGAGGAAGCCAGAGAGCTCGTTCTCCATCAGGTCCTTGAGCTCACGGCGGCTCAAAGTGTTGCCACTGCCCTCCTTAGCAGCGTACTTGTGGAACACGGTGATCATGGACTCCATGGCACGTTCCAGATCTGACGGCATGGCTGCAGGTCGTTCACGAGTGTTGAGTTGGCGATTGAGAAGAGGTTGAATTGTGCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1760853 lncRNA downstream 6545 31562112 ~ 31562408 (-) True G1538482
TU1760846 lncRNA downstream 13987 31554745 ~ 31554966 (-) True G1538475
TU1760830 lncRNA downstream 17730 31535733 ~ 31551223 (-) False G1538462
TU1760831 lncRNA downstream 17730 31535733 ~ 31551223 (-) True G1538462
TU1760827 lncRNA downstream 42420 31526332 ~ 31526533 (-) True G1538459
TU1760862 lncRNA upstream 4866 31576315 ~ 31576538 (-) True G1538490
TU1760864 lncRNA upstream 9892 31581341 ~ 31581592 (-) True G1538492
TU1760908 lncRNA upstream 48699 31620148 ~ 31621584 (-) True G1538535
TU1760917 lncRNA upstream 63176 31634625 ~ 31636063 (-) True LOC110496009
TU1760923 lncRNA upstream 68108 31639557 ~ 31639801 (-) True G1538548
XM_036952492.1 mRNA downstream 33577 31530404 ~ 31535376 (-) True LOC110496005
XM_021571615.2 mRNA downstream 33980 31530404 ~ 31534973 (-) False LOC110496005
XM_021571617.2 mRNA downstream 34598 31530404 ~ 31534355 (-) False LOC110496005
XM_021571612.2 mRNA downstream 44070 31492852 ~ 31524883 (-) False LOC110496004
XM_036952495.1 mRNA upstream 57414 31628863 ~ 31652389 (-) False LOC110496009
XM_021571620.2 mRNA upstream 57414 31628863 ~ 31654198 (-) False LOC110496009
XM_036952494.1 mRNA upstream 57414 31628863 ~ 31654236 (-) False LOC110496009
XM_021571625.2 mRNA upstream 113391 31684840 ~ 31692733 (-) False LOC100136047
XM_036952505.1 mRNA upstream 151065 31722514 ~ 31769104 (-) False ash1l
TU1760774 other downstream 45497 31516111 ~ 31523456 (-) True LOC110496004
TU1760029 other downstream 554777 31011878 ~ 31014176 (-) True LOC110495994
TU1759987 other downstream 615645 30914369 ~ 30953308 (-) True LOC110495992
TU1759986 other downstream 654658 30911827 ~ 30914295 (-) False LOC110495992
TU1759310 other downstream 965561 30602716 ~ 30603392 (-) True G1537091
TU1760868 other upstream 114303 31685752 ~ 31692671 (-) True LOC100136047
TU1760970 other upstream 143057 31714506 ~ 31715181 (-) True G1538595
TU1761118 other upstream 485862 32057311 ~ 32058785 (-) True atp5if1a
TU1761767 other upstream 990277 32561726 ~ 32562120 (-) True G1539348
TU1762604 other upstream 1328129 32899578 ~ 32936569 (-) True G1540148

Expression Profile